Gene : Phvul.003G109800 P. vulgaris v2.1
Defline:  (1 of 46) PF00407 - Pathogenesis-related protein Bet v I family (Bet_v_1) Genomic Order:  1107
Name:  ? Phvul.003G109800 Secondary Identifier:  ? PAC:37144664
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G109800 0.5kb upstream 0.5kb upstream 1285 true Chr03: 27999326-28000610 Phaseolus vulgaris
Phvul.003G109800 0.5kb upstream 0.5kb upstream 500 false Chr03: 27999326-27999825 Phaseolus vulgaris
Phvul.003G109800 0.5kb downstream 0.5kb downstream 1285 true Chr03: 27999826-28001110 Phaseolus vulgaris
Phvul.003G109800 0.5kb downstream 0.5kb downstream 500 false Chr03: 28000611-28001110 Phaseolus vulgaris
Phvul.003G109800 1.0kb upstream 1.0kb upstream 1785 true Chr03: 27998826-28000610 Phaseolus vulgaris
Phvul.003G109800 1.0kb upstream 1.0kb upstream 1000 false Chr03: 27998826-27999825 Phaseolus vulgaris
Phvul.003G109800 1.0kb downstream 1.0kb downstream 1785 true Chr03: 27999826-28001610 Phaseolus vulgaris
Phvul.003G109800 1.0kb downstream 1.0kb downstream 1000 false Chr03: 28000611-28001610 Phaseolus vulgaris
Phvul.003G109800 2.0kb upstream 2.0kb upstream 2785 true Chr03: 27997826-28000610 Phaseolus vulgaris
Phvul.003G109800 2.0kb upstream 2.0kb upstream 2000 false Chr03: 27997826-27999825 Phaseolus vulgaris
Phvul.003G109800 2.0kb downstream 2.0kb downstream 2785 true Chr03: 27999826-28002610 Phaseolus vulgaris
Phvul.003G109800 2.0kb downstream 2.0kb downstream 2000 false Chr03: 28000611-28002610 Phaseolus vulgaris
Phvul.003G109800 5.0kb upstream 5.0kb upstream 5785 true Chr03: 27994826-28000610 Phaseolus vulgaris
Phvul.003G109800 5.0kb upstream 5.0kb upstream 5000 false Chr03: 27994826-27999825 Phaseolus vulgaris
Phvul.003G109800 5.0kb downstream 5.0kb downstream 5785 true Chr03: 27999826-28005610 Phaseolus vulgaris
Phvul.003G109800 5.0kb downstream 5.0kb downstream 5000 false Chr03: 28000611-28005610 Phaseolus vulgaris
Phvul.003G109800 10.0kb upstream 10.0kb upstream 10785 true Chr03: 27989826-28000610 Phaseolus vulgaris
Phvul.003G109800 10.0kb upstream 10.0kb upstream 10000 false Chr03: 27989826-27999825 Phaseolus vulgaris
Phvul.003G109800 10.0kb downstream 10.0kb downstream 10785 true Chr03: 27999826-28010610 Phaseolus vulgaris
Phvul.003G109800 10.0kb downstream 10.0kb downstream 10000 false Chr03: 28000611-28010610 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312983 5265 Fabidae View MSA
124072279 5270 Rosid View MSA
123752390 5271 Pentapetalae View MSA
122797871 5272 Eudicot View MSA
122048225 5273 Angiosperm View MSA
121351454 5274 Embryophyte View MSA
123382173 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.4851 0.0 14.5794    
cufflinks 2.30156 0.0 8.10566    
cufflinks 0.128721 0.0 0.581949 Low Low
cufflinks 5.59612 0.0 17.7963   High
cufflinks 0.379844 0.0 1.55876 Low  
cufflinks 0.167927 0.0 0.739268 Low Low
cufflinks 5.40546 0.0 17.242    
cufflinks 4.28091 0.0 14.0765    
cufflinks 4.19629 0.0 13.7513    
cufflinks 0.298629 0.0 1.25003 Low  
cufflinks 0.577467 0.0 2.28738    

0 Strain