Gene : Phvul.003G110200 P. vulgaris v2.1
Defline:  (1 of 2) PTHR31052:SF3 - COBRA-LIKE PROTEIN 7-RELATED Genomic Order:  1112
Name:  ? Phvul.003G110200 Secondary Identifier:  ? PAC:37146950
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G110200 0.5kb upstream 0.5kb upstream 3142 true Chr03: 28304987-28308128 Phaseolus vulgaris
Phvul.003G110200 0.5kb upstream 0.5kb upstream 500 false Chr03: 28307629-28308128 Phaseolus vulgaris
Phvul.003G110200 0.5kb downstream 0.5kb downstream 3142 true Chr03: 28304487-28307628 Phaseolus vulgaris
Phvul.003G110200 0.5kb downstream 0.5kb downstream 500 false Chr03: 28304487-28304986 Phaseolus vulgaris
Phvul.003G110200 1.0kb upstream 1.0kb upstream 3642 true Chr03: 28304987-28308628 Phaseolus vulgaris
Phvul.003G110200 1.0kb upstream 1.0kb upstream 1000 false Chr03: 28307629-28308628 Phaseolus vulgaris
Phvul.003G110200 1.0kb downstream 1.0kb downstream 3642 true Chr03: 28303987-28307628 Phaseolus vulgaris
Phvul.003G110200 1.0kb downstream 1.0kb downstream 1000 false Chr03: 28303987-28304986 Phaseolus vulgaris
Phvul.003G110200 2.0kb upstream 2.0kb upstream 4642 true Chr03: 28304987-28309628 Phaseolus vulgaris
Phvul.003G110200 2.0kb upstream 2.0kb upstream 2000 false Chr03: 28307629-28309628 Phaseolus vulgaris
Phvul.003G110200 2.0kb downstream 2.0kb downstream 4642 true Chr03: 28302987-28307628 Phaseolus vulgaris
Phvul.003G110200 2.0kb downstream 2.0kb downstream 2000 false Chr03: 28302987-28304986 Phaseolus vulgaris
Phvul.003G110200 5.0kb upstream 5.0kb upstream 7642 true Chr03: 28304987-28312628 Phaseolus vulgaris
Phvul.003G110200 5.0kb upstream 5.0kb upstream 5000 false Chr03: 28307629-28312628 Phaseolus vulgaris
Phvul.003G110200 5.0kb downstream 5.0kb downstream 7642 true Chr03: 28299987-28307628 Phaseolus vulgaris
Phvul.003G110200 5.0kb downstream 5.0kb downstream 5000 false Chr03: 28299987-28304986 Phaseolus vulgaris
Phvul.003G110200 10.0kb upstream 10.0kb upstream 12642 true Chr03: 28304987-28317628 Phaseolus vulgaris
Phvul.003G110200 10.0kb upstream 10.0kb upstream 10000 false Chr03: 28307629-28317628 Phaseolus vulgaris
Phvul.003G110200 10.0kb downstream 10.0kb downstream 12642 true Chr03: 28294987-28307628 Phaseolus vulgaris
Phvul.003G110200 10.0kb downstream 10.0kb downstream 10000 false Chr03: 28294987-28304986 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307194 5265 Fabidae View MSA
124061230 5270 Rosid View MSA
123750935 5271 Pentapetalae View MSA
122797556 5272 Eudicot View MSA
122048616 5273 Angiosperm View MSA
121351657 5274 Embryophyte View MSA
123382264 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.85071 0.0 15.982   Low
cufflinks 13.4647 0.0 34.9515    
cufflinks 4.9333 0.0 13.6838   Low
cufflinks 10.0959 0.0 26.4969    
cufflinks 9.50952 0.0 25.0176    
cufflinks 8.67459 0.0 23.0014    
cufflinks 26.0054 0.0 67.6633   High
cufflinks 15.2397 0.0 39.4425    
cufflinks 13.2955 0.0 34.5082    
cufflinks 37.4224 0.0 99.0874 High High
cufflinks 10.7139 0.0 28.0523    

0 Strain