Gene : Phvul.003G107800 P. vulgaris v2.1
Defline:  (1 of 1) PTHR22904:SF169 - RNA POLYMERASE II-ASSOCIATED PROTEIN 3 Genomic Order:  1084
Name:  ? Phvul.003G107800 Secondary Identifier:  ? PAC:37145299
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G107800 0.5kb upstream 0.5kb upstream 6255 true Chr03: 27275804-27282058 Phaseolus vulgaris
Phvul.003G107800 0.5kb upstream 0.5kb upstream 500 false Chr03: 27275804-27276303 Phaseolus vulgaris
Phvul.003G107800 0.5kb downstream 0.5kb downstream 6255 true Chr03: 27276304-27282558 Phaseolus vulgaris
Phvul.003G107800 0.5kb downstream 0.5kb downstream 500 false Chr03: 27282059-27282558 Phaseolus vulgaris
Phvul.003G107800 1.0kb upstream 1.0kb upstream 6755 true Chr03: 27275304-27282058 Phaseolus vulgaris
Phvul.003G107800 1.0kb upstream 1.0kb upstream 1000 false Chr03: 27275304-27276303 Phaseolus vulgaris
Phvul.003G107800 1.0kb downstream 1.0kb downstream 6755 true Chr03: 27276304-27283058 Phaseolus vulgaris
Phvul.003G107800 1.0kb downstream 1.0kb downstream 1000 false Chr03: 27282059-27283058 Phaseolus vulgaris
Phvul.003G107800 2.0kb upstream 2.0kb upstream 7755 true Chr03: 27274304-27282058 Phaseolus vulgaris
Phvul.003G107800 2.0kb upstream 2.0kb upstream 2000 false Chr03: 27274304-27276303 Phaseolus vulgaris
Phvul.003G107800 2.0kb downstream 2.0kb downstream 7755 true Chr03: 27276304-27284058 Phaseolus vulgaris
Phvul.003G107800 2.0kb downstream 2.0kb downstream 2000 false Chr03: 27282059-27284058 Phaseolus vulgaris
Phvul.003G107800 5.0kb upstream 5.0kb upstream 10755 true Chr03: 27271304-27282058 Phaseolus vulgaris
Phvul.003G107800 5.0kb upstream 5.0kb upstream 5000 false Chr03: 27271304-27276303 Phaseolus vulgaris
Phvul.003G107800 5.0kb downstream 5.0kb downstream 10755 true Chr03: 27276304-27287058 Phaseolus vulgaris
Phvul.003G107800 5.0kb downstream 5.0kb downstream 5000 false Chr03: 27282059-27287058 Phaseolus vulgaris
Phvul.003G107800 10.0kb upstream 10.0kb upstream 15755 true Chr03: 27266304-27282058 Phaseolus vulgaris
Phvul.003G107800 10.0kb upstream 10.0kb upstream 10000 false Chr03: 27266304-27276303 Phaseolus vulgaris
Phvul.003G107800 10.0kb downstream 10.0kb downstream 15755 true Chr03: 27276304-27292058 Phaseolus vulgaris
Phvul.003G107800 10.0kb downstream 10.0kb downstream 10000 false Chr03: 27282059-27292058 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026696 5273 Angiosperm View MSA
122303253 5265 Fabidae View MSA
124069433 5270 Rosid View MSA
123746924 5271 Pentapetalae View MSA
122794448 5272 Eudicot View MSA
123429169 5275 Viridiplantae View MSA
121348213 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 25.8191 0.0 66.8535    
cufflinks 21.5403 0.0 55.681    
cufflinks 15.9407 0.0 41.4391   Low
cufflinks 30.7228 0.0 79.8543    
cufflinks 33.203 0.0 86.516 High High
cufflinks 22.4682 0.0 58.0761    
cufflinks 19.5839 0.0 50.6334    
cufflinks 13.5468 0.0 35.3919   Low
cufflinks 29.654 0.0 76.9902    
cufflinks 24.8937 0.0 64.3837    
cufflinks 39.8514 0.0 104.693 High High

0 Strain