Gene : Phvul.003G099600 P. vulgaris v2.1
Defline:  (1 of 6) 2.2.1.7 - 1-deoxy-D-xylulose-5-phosphate synthase / DXP-synthase Genomic Order:  1046
Name:  ? Phvul.003G099600 Secondary Identifier:  ? PAC:37147915
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-7560 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G099600 0.5kb upstream 0.5kb upstream 4740 true Chr03: 25701110-25705849 Phaseolus vulgaris
Phvul.003G099600 0.5kb upstream 0.5kb upstream 500 false Chr03: 25701110-25701609 Phaseolus vulgaris
Phvul.003G099600 0.5kb downstream 0.5kb downstream 4740 true Chr03: 25701610-25706349 Phaseolus vulgaris
Phvul.003G099600 0.5kb downstream 0.5kb downstream 500 false Chr03: 25705850-25706349 Phaseolus vulgaris
Phvul.003G099600 1.0kb upstream 1.0kb upstream 5240 true Chr03: 25700610-25705849 Phaseolus vulgaris
Phvul.003G099600 1.0kb upstream 1.0kb upstream 1000 false Chr03: 25700610-25701609 Phaseolus vulgaris
Phvul.003G099600 1.0kb downstream 1.0kb downstream 5240 true Chr03: 25701610-25706849 Phaseolus vulgaris
Phvul.003G099600 1.0kb downstream 1.0kb downstream 1000 false Chr03: 25705850-25706849 Phaseolus vulgaris
Phvul.003G099600 2.0kb upstream 2.0kb upstream 6240 true Chr03: 25699610-25705849 Phaseolus vulgaris
Phvul.003G099600 2.0kb upstream 2.0kb upstream 2000 false Chr03: 25699610-25701609 Phaseolus vulgaris
Phvul.003G099600 2.0kb downstream 2.0kb downstream 6240 true Chr03: 25701610-25707849 Phaseolus vulgaris
Phvul.003G099600 2.0kb downstream 2.0kb downstream 2000 false Chr03: 25705850-25707849 Phaseolus vulgaris
Phvul.003G099600 5.0kb upstream 5.0kb upstream 9240 true Chr03: 25696610-25705849 Phaseolus vulgaris
Phvul.003G099600 5.0kb upstream 5.0kb upstream 5000 false Chr03: 25696610-25701609 Phaseolus vulgaris
Phvul.003G099600 5.0kb downstream 5.0kb downstream 9240 true Chr03: 25701610-25710849 Phaseolus vulgaris
Phvul.003G099600 5.0kb downstream 5.0kb downstream 5000 false Chr03: 25705850-25710849 Phaseolus vulgaris
Phvul.003G099600 10.0kb upstream 10.0kb upstream 14240 true Chr03: 25691610-25705849 Phaseolus vulgaris
Phvul.003G099600 10.0kb upstream 10.0kb upstream 10000 false Chr03: 25691610-25701609 Phaseolus vulgaris
Phvul.003G099600 10.0kb downstream 10.0kb downstream 14240 true Chr03: 25701610-25715849 Phaseolus vulgaris
Phvul.003G099600 10.0kb downstream 10.0kb downstream 10000 false Chr03: 25705850-25715849 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310498 5265 Fabidae View MSA
124069132 5270 Rosid View MSA
123739716 5271 Pentapetalae View MSA
122785691 5272 Eudicot View MSA
122043887 5273 Angiosperm View MSA
121350299 5274 Embryophyte View MSA
123428527 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 119.044 0.0 366.918 High  
cufflinks 57.2219 0.0 159.778 High  
cufflinks 285.495 0.0 1057.39 High High
cufflinks 52.9266 0.0 146.005 High  
cufflinks 53.494 0.0 147.5 High  
cufflinks 83.1973 0.0 243.197 High  
cufflinks 8.22876 0.0 21.639   Low
cufflinks 20.2809 0.0 52.6414    
cufflinks 7.05174 0.0 18.7515   Low
cufflinks 15.8529 0.0 40.9768    
cufflinks 34.5907 0.0 91.9023 High  

0 Strain