Gene : Phvul.003G086100 P. vulgaris v2.1
Defline:  (1 of 29) PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) Genomic Order:  897
Name:  ? Phvul.003G086100 Secondary Identifier:  ? PAC:37146766
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G086100 0.5kb upstream 0.5kb upstream 2999 true Chr03: 16902823-16905821 Phaseolus vulgaris
Phvul.003G086100 0.5kb upstream 0.5kb upstream 500 false Chr03: 16902823-16903322 Phaseolus vulgaris
Phvul.003G086100 0.5kb downstream 0.5kb downstream 2999 true Chr03: 16903323-16906321 Phaseolus vulgaris
Phvul.003G086100 0.5kb downstream 0.5kb downstream 500 false Chr03: 16905822-16906321 Phaseolus vulgaris
Phvul.003G086100 1.0kb upstream 1.0kb upstream 3499 true Chr03: 16902323-16905821 Phaseolus vulgaris
Phvul.003G086100 1.0kb upstream 1.0kb upstream 1000 false Chr03: 16902323-16903322 Phaseolus vulgaris
Phvul.003G086100 1.0kb downstream 1.0kb downstream 3499 true Chr03: 16903323-16906821 Phaseolus vulgaris
Phvul.003G086100 1.0kb downstream 1.0kb downstream 1000 false Chr03: 16905822-16906821 Phaseolus vulgaris
Phvul.003G086100 2.0kb upstream 2.0kb upstream 4499 true Chr03: 16901323-16905821 Phaseolus vulgaris
Phvul.003G086100 2.0kb upstream 2.0kb upstream 2000 false Chr03: 16901323-16903322 Phaseolus vulgaris
Phvul.003G086100 2.0kb downstream 2.0kb downstream 4499 true Chr03: 16903323-16907821 Phaseolus vulgaris
Phvul.003G086100 2.0kb downstream 2.0kb downstream 2000 false Chr03: 16905822-16907821 Phaseolus vulgaris
Phvul.003G086100 5.0kb upstream 5.0kb upstream 7499 true Chr03: 16898323-16905821 Phaseolus vulgaris
Phvul.003G086100 5.0kb upstream 5.0kb upstream 5000 false Chr03: 16898323-16903322 Phaseolus vulgaris
Phvul.003G086100 5.0kb downstream 5.0kb downstream 7499 true Chr03: 16903323-16910821 Phaseolus vulgaris
Phvul.003G086100 5.0kb downstream 5.0kb downstream 5000 false Chr03: 16905822-16910821 Phaseolus vulgaris
Phvul.003G086100 10.0kb upstream 10.0kb upstream 12499 true Chr03: 16893323-16905821 Phaseolus vulgaris
Phvul.003G086100 10.0kb upstream 10.0kb upstream 10000 false Chr03: 16893323-16903322 Phaseolus vulgaris
Phvul.003G086100 10.0kb downstream 10.0kb downstream 12499 true Chr03: 16903323-16915821 Phaseolus vulgaris
Phvul.003G086100 10.0kb downstream 10.0kb downstream 10000 false Chr03: 16905822-16915821 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307922 5265 Fabidae View MSA
124064149 5270 Rosid View MSA
123753301 5271 Pentapetalae View MSA
122789942 5272 Eudicot View MSA
122043539 5273 Angiosperm View MSA
121344903 5274 Embryophyte View MSA
123380125 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.5796 0.0 48.0334    
cufflinks 12.7924 0.0 33.3766    
cufflinks 82.7684 0.0 233.971 High High
cufflinks 17.2147 0.0 44.5825    
cufflinks 16.2873 0.0 42.1951    
cufflinks 63.573 0.0 174.451 High High
cufflinks 3.96293 0.0 11.3379   Low
cufflinks 6.38807 0.0 17.4784    
cufflinks 3.4025 0.0 9.93423   Low
cufflinks 13.9234 0.0 36.2073    
cufflinks 11.9545 0.0 31.3165    

0 Strain