Gene : Phvul.003G088400 P. vulgaris v2.1
Defline:  (1 of 37) PF03000 - NPH3 family (NPH3) Genomic Order:  907
Name:  ? Phvul.003G088400 Secondary Identifier:  ? PAC:37145001
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Ontology Annotation Displayer

0 Pathways

Genomics

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Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G088400 0.5kb upstream 0.5kb upstream 4339 true Chr03: 17030441-17034779 Phaseolus vulgaris
Phvul.003G088400 0.5kb upstream 0.5kb upstream 500 false Chr03: 17030441-17030940 Phaseolus vulgaris
Phvul.003G088400 0.5kb downstream 0.5kb downstream 4339 true Chr03: 17030941-17035279 Phaseolus vulgaris
Phvul.003G088400 0.5kb downstream 0.5kb downstream 500 false Chr03: 17034780-17035279 Phaseolus vulgaris
Phvul.003G088400 1.0kb upstream 1.0kb upstream 4839 true Chr03: 17029941-17034779 Phaseolus vulgaris
Phvul.003G088400 1.0kb upstream 1.0kb upstream 1000 false Chr03: 17029941-17030940 Phaseolus vulgaris
Phvul.003G088400 1.0kb downstream 1.0kb downstream 4839 true Chr03: 17030941-17035779 Phaseolus vulgaris
Phvul.003G088400 1.0kb downstream 1.0kb downstream 1000 false Chr03: 17034780-17035779 Phaseolus vulgaris
Phvul.003G088400 2.0kb upstream 2.0kb upstream 5839 true Chr03: 17028941-17034779 Phaseolus vulgaris
Phvul.003G088400 2.0kb upstream 2.0kb upstream 2000 false Chr03: 17028941-17030940 Phaseolus vulgaris
Phvul.003G088400 2.0kb downstream 2.0kb downstream 5839 true Chr03: 17030941-17036779 Phaseolus vulgaris
Phvul.003G088400 2.0kb downstream 2.0kb downstream 2000 false Chr03: 17034780-17036779 Phaseolus vulgaris
Phvul.003G088400 5.0kb upstream 5.0kb upstream 8839 true Chr03: 17025941-17034779 Phaseolus vulgaris
Phvul.003G088400 5.0kb upstream 5.0kb upstream 5000 false Chr03: 17025941-17030940 Phaseolus vulgaris
Phvul.003G088400 5.0kb downstream 5.0kb downstream 8839 true Chr03: 17030941-17039779 Phaseolus vulgaris
Phvul.003G088400 5.0kb downstream 5.0kb downstream 5000 false Chr03: 17034780-17039779 Phaseolus vulgaris
Phvul.003G088400 10.0kb upstream 10.0kb upstream 13839 true Chr03: 17020941-17034779 Phaseolus vulgaris
Phvul.003G088400 10.0kb upstream 10.0kb upstream 10000 false Chr03: 17020941-17030940 Phaseolus vulgaris
Phvul.003G088400 10.0kb downstream 10.0kb downstream 13839 true Chr03: 17030941-17044779 Phaseolus vulgaris
Phvul.003G088400 10.0kb downstream 10.0kb downstream 10000 false Chr03: 17034780-17044779 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026454 5273 Angiosperm View MSA
122313072 5265 Fabidae View MSA
124067148 5270 Rosid View MSA
123737998 5271 Pentapetalae View MSA
122789015 5272 Eudicot View MSA
121296339 5274 Embryophyte View MSA
123334520 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.18929 0.0 10.3152   Low
cufflinks 11.1615 0.0 40.2216    
cufflinks 7.10252 0.0 28.0866    
cufflinks 1.17823 0.0 5.66189   Low
cufflinks 24.323 0.0 76.4399   High
cufflinks 8.56156 0.0 32.8378    
cufflinks 10.9015 0.0 39.5126    
cufflinks 4.54425 0.0 17.4524    
cufflinks 7.54924 0.0 26.3672    
cufflinks 5.95194 0.0 24.7382    
cufflinks 23.9653 0.0 83.5495   High

0 Strain