Gene : Phvul.003G078200 P. vulgaris v2.1
Defline:  (1 of 2) PTHR31071:SF14 - F25C20.16 Genomic Order:  785
Name:  ? Phvul.003G078200 Secondary Identifier:  ? PAC:37146714
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G078200 0.5kb upstream 0.5kb upstream 2529 true Chr03: 12522558-12525086 Phaseolus vulgaris
Phvul.003G078200 0.5kb upstream 0.5kb upstream 500 false Chr03: 12522558-12523057 Phaseolus vulgaris
Phvul.003G078200 0.5kb downstream 0.5kb downstream 2529 true Chr03: 12523058-12525586 Phaseolus vulgaris
Phvul.003G078200 0.5kb downstream 0.5kb downstream 500 false Chr03: 12525087-12525586 Phaseolus vulgaris
Phvul.003G078200 1.0kb upstream 1.0kb upstream 3029 true Chr03: 12522058-12525086 Phaseolus vulgaris
Phvul.003G078200 1.0kb upstream 1.0kb upstream 1000 false Chr03: 12522058-12523057 Phaseolus vulgaris
Phvul.003G078200 1.0kb downstream 1.0kb downstream 3029 true Chr03: 12523058-12526086 Phaseolus vulgaris
Phvul.003G078200 1.0kb downstream 1.0kb downstream 1000 false Chr03: 12525087-12526086 Phaseolus vulgaris
Phvul.003G078200 2.0kb upstream 2.0kb upstream 4029 true Chr03: 12521058-12525086 Phaseolus vulgaris
Phvul.003G078200 2.0kb upstream 2.0kb upstream 2000 false Chr03: 12521058-12523057 Phaseolus vulgaris
Phvul.003G078200 2.0kb downstream 2.0kb downstream 4029 true Chr03: 12523058-12527086 Phaseolus vulgaris
Phvul.003G078200 2.0kb downstream 2.0kb downstream 2000 false Chr03: 12525087-12527086 Phaseolus vulgaris
Phvul.003G078200 5.0kb upstream 5.0kb upstream 7029 true Chr03: 12518058-12525086 Phaseolus vulgaris
Phvul.003G078200 5.0kb upstream 5.0kb upstream 5000 false Chr03: 12518058-12523057 Phaseolus vulgaris
Phvul.003G078200 5.0kb downstream 5.0kb downstream 7029 true Chr03: 12523058-12530086 Phaseolus vulgaris
Phvul.003G078200 5.0kb downstream 5.0kb downstream 5000 false Chr03: 12525087-12530086 Phaseolus vulgaris
Phvul.003G078200 10.0kb upstream 10.0kb upstream 12029 true Chr03: 12513058-12525086 Phaseolus vulgaris
Phvul.003G078200 10.0kb upstream 10.0kb upstream 10000 false Chr03: 12513058-12523057 Phaseolus vulgaris
Phvul.003G078200 10.0kb downstream 10.0kb downstream 12029 true Chr03: 12523058-12535086 Phaseolus vulgaris
Phvul.003G078200 10.0kb downstream 10.0kb downstream 10000 false Chr03: 12525087-12535086 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122254624 5265 Fabidae View MSA
123996701 5270 Rosid View MSA
123571127 5271 Pentapetalae View MSA
122605857 5272 Eudicot View MSA
122050340 5273 Angiosperm View MSA
121351123 5274 Embryophyte View MSA
123382016 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.282199 0.0 1.07307 Low Low
cufflinks 0.658164 0.0 2.32208    
cufflinks 0.485163 0.0 1.76071 Low  
cufflinks 0.529089 0.0 1.92085 Low  
cufflinks 3.0216 0.0 9.06772   High
cufflinks 1.22037 0.0 4.01733    
cufflinks 1.25402 0.0 4.10475    
cufflinks 0.308124 0.0 1.15858 Low Low
cufflinks 1.0916 0.0 3.63551    
cufflinks 2.72601 0.0 8.22769   High
cufflinks 2.95976 0.0 8.84857   High

0 Strain