Gene : Phvul.003G080400 P. vulgaris v2.1
Defline:  (1 of 2) K00605 - aminomethyltransferase (gcvT, AMT) Genomic Order:  807
Name:  ? Phvul.003G080400 Secondary Identifier:  ? PAC:37147451
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris GLYCLEAV-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G080400 0.5kb upstream 0.5kb upstream 3489 true Chr03: 13119115-13122603 Phaseolus vulgaris
Phvul.003G080400 0.5kb upstream 0.5kb upstream 500 false Chr03: 13119115-13119614 Phaseolus vulgaris
Phvul.003G080400 0.5kb downstream 0.5kb downstream 3489 true Chr03: 13119615-13123103 Phaseolus vulgaris
Phvul.003G080400 0.5kb downstream 0.5kb downstream 500 false Chr03: 13122604-13123103 Phaseolus vulgaris
Phvul.003G080400 1.0kb upstream 1.0kb upstream 3989 true Chr03: 13118615-13122603 Phaseolus vulgaris
Phvul.003G080400 1.0kb upstream 1.0kb upstream 1000 false Chr03: 13118615-13119614 Phaseolus vulgaris
Phvul.003G080400 1.0kb downstream 1.0kb downstream 3989 true Chr03: 13119615-13123603 Phaseolus vulgaris
Phvul.003G080400 1.0kb downstream 1.0kb downstream 1000 false Chr03: 13122604-13123603 Phaseolus vulgaris
Phvul.003G080400 2.0kb upstream 2.0kb upstream 4989 true Chr03: 13117615-13122603 Phaseolus vulgaris
Phvul.003G080400 2.0kb upstream 2.0kb upstream 2000 false Chr03: 13117615-13119614 Phaseolus vulgaris
Phvul.003G080400 2.0kb downstream 2.0kb downstream 4989 true Chr03: 13119615-13124603 Phaseolus vulgaris
Phvul.003G080400 2.0kb downstream 2.0kb downstream 2000 false Chr03: 13122604-13124603 Phaseolus vulgaris
Phvul.003G080400 5.0kb upstream 5.0kb upstream 7989 true Chr03: 13114615-13122603 Phaseolus vulgaris
Phvul.003G080400 5.0kb upstream 5.0kb upstream 5000 false Chr03: 13114615-13119614 Phaseolus vulgaris
Phvul.003G080400 5.0kb downstream 5.0kb downstream 7989 true Chr03: 13119615-13127603 Phaseolus vulgaris
Phvul.003G080400 5.0kb downstream 5.0kb downstream 5000 false Chr03: 13122604-13127603 Phaseolus vulgaris
Phvul.003G080400 10.0kb upstream 10.0kb upstream 12989 true Chr03: 13109615-13122603 Phaseolus vulgaris
Phvul.003G080400 10.0kb upstream 10.0kb upstream 10000 false Chr03: 13109615-13119614 Phaseolus vulgaris
Phvul.003G080400 10.0kb downstream 10.0kb downstream 12989 true Chr03: 13119615-13132603 Phaseolus vulgaris
Phvul.003G080400 10.0kb downstream 10.0kb downstream 10000 false Chr03: 13122604-13132603 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304206 5265 Fabidae View MSA
124063348 5270 Rosid View MSA
123743205 5271 Pentapetalae View MSA
122791059 5272 Eudicot View MSA
122045036 5273 Angiosperm View MSA
121345728 5274 Embryophyte View MSA
123424844 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.9234 0.0 33.867    
cufflinks 19.5626 0.0 50.6035    
cufflinks 680.237 0.0 2904.22 High High
cufflinks 18.2137 0.0 47.2436    
cufflinks 40.239 0.0 105.418 High  
cufflinks 175.28 0.0 543.738 High High
cufflinks 7.82971 0.0 21.1939    
cufflinks 2.74639 0.0 8.24363   Low
cufflinks 7.02048 0.0 19.2119    
cufflinks 14.2791 0.0 37.301    
cufflinks 41.8283 0.0 109.914 High  

0 Strain