Gene : Phvul.003G085000 P. vulgaris v2.1
Defline:  (1 of 2) PTHR31636:SF45 - SCARECROW-LIKE PROTEIN 13 Genomic Order:  856
Name:  ? Phvul.003G085000 Secondary Identifier:  ? PAC:37146226
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G085000 0.5kb upstream 0.5kb upstream 4112 true Chr03: 14777112-14781223 Phaseolus vulgaris
Phvul.003G085000 0.5kb upstream 0.5kb upstream 500 false Chr03: 14780724-14781223 Phaseolus vulgaris
Phvul.003G085000 0.5kb downstream 0.5kb downstream 4112 true Chr03: 14776612-14780723 Phaseolus vulgaris
Phvul.003G085000 0.5kb downstream 0.5kb downstream 500 false Chr03: 14776612-14777111 Phaseolus vulgaris
Phvul.003G085000 1.0kb upstream 1.0kb upstream 4612 true Chr03: 14777112-14781723 Phaseolus vulgaris
Phvul.003G085000 1.0kb upstream 1.0kb upstream 1000 false Chr03: 14780724-14781723 Phaseolus vulgaris
Phvul.003G085000 1.0kb downstream 1.0kb downstream 4612 true Chr03: 14776112-14780723 Phaseolus vulgaris
Phvul.003G085000 1.0kb downstream 1.0kb downstream 1000 false Chr03: 14776112-14777111 Phaseolus vulgaris
Phvul.003G085000 2.0kb upstream 2.0kb upstream 5612 true Chr03: 14777112-14782723 Phaseolus vulgaris
Phvul.003G085000 2.0kb upstream 2.0kb upstream 2000 false Chr03: 14780724-14782723 Phaseolus vulgaris
Phvul.003G085000 2.0kb downstream 2.0kb downstream 5612 true Chr03: 14775112-14780723 Phaseolus vulgaris
Phvul.003G085000 2.0kb downstream 2.0kb downstream 2000 false Chr03: 14775112-14777111 Phaseolus vulgaris
Phvul.003G085000 5.0kb upstream 5.0kb upstream 8612 true Chr03: 14777112-14785723 Phaseolus vulgaris
Phvul.003G085000 5.0kb upstream 5.0kb upstream 5000 false Chr03: 14780724-14785723 Phaseolus vulgaris
Phvul.003G085000 5.0kb downstream 5.0kb downstream 8612 true Chr03: 14772112-14780723 Phaseolus vulgaris
Phvul.003G085000 5.0kb downstream 5.0kb downstream 5000 false Chr03: 14772112-14777111 Phaseolus vulgaris
Phvul.003G085000 10.0kb upstream 10.0kb upstream 13612 true Chr03: 14777112-14790723 Phaseolus vulgaris
Phvul.003G085000 10.0kb upstream 10.0kb upstream 10000 false Chr03: 14780724-14790723 Phaseolus vulgaris
Phvul.003G085000 10.0kb downstream 10.0kb downstream 13612 true Chr03: 14767112-14780723 Phaseolus vulgaris
Phvul.003G085000 10.0kb downstream 10.0kb downstream 10000 false Chr03: 14767112-14777111 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310892 5265 Fabidae View MSA
124063713 5270 Rosid View MSA
123752771 5271 Pentapetalae View MSA
122794202 5272 Eudicot View MSA
122051595 5273 Angiosperm View MSA
121350442 5274 Embryophyte View MSA
123381734 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.0776 0.0 40.0578    
cufflinks 14.6307 0.0 42.0939    
cufflinks 4.9312 0.0 17.824   Low
cufflinks 12.4617 0.0 40.3497    
cufflinks 9.47087 0.0 27.7115    
cufflinks 9.84791 0.0 32.2554    
cufflinks 39.4668 0.0 119.271 High High
cufflinks 23.0255 0.0 65.4898    
cufflinks 21.5218 0.0 68.9373    
cufflinks 75.1953 0.0 262.396 High High
cufflinks 8.16586 0.0 27.3794    

0 Strain