Gene : Phvul.003G084300 P. vulgaris v2.1
Defline:  (1 of 1) PTHR11413:SF26 - CYSTATIN C Genomic Order:  849
Name:  ? Phvul.003G084300 Secondary Identifier:  ? PAC:37146986
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G084300 0.5kb upstream 0.5kb upstream 1692 true Chr03: 14533064-14534755 Phaseolus vulgaris
Phvul.003G084300 0.5kb upstream 0.5kb upstream 500 false Chr03: 14533064-14533563 Phaseolus vulgaris
Phvul.003G084300 0.5kb downstream 0.5kb downstream 1692 true Chr03: 14533564-14535255 Phaseolus vulgaris
Phvul.003G084300 0.5kb downstream 0.5kb downstream 500 false Chr03: 14534756-14535255 Phaseolus vulgaris
Phvul.003G084300 1.0kb upstream 1.0kb upstream 2192 true Chr03: 14532564-14534755 Phaseolus vulgaris
Phvul.003G084300 1.0kb upstream 1.0kb upstream 1000 false Chr03: 14532564-14533563 Phaseolus vulgaris
Phvul.003G084300 1.0kb downstream 1.0kb downstream 2192 true Chr03: 14533564-14535755 Phaseolus vulgaris
Phvul.003G084300 1.0kb downstream 1.0kb downstream 1000 false Chr03: 14534756-14535755 Phaseolus vulgaris
Phvul.003G084300 2.0kb upstream 2.0kb upstream 3192 true Chr03: 14531564-14534755 Phaseolus vulgaris
Phvul.003G084300 2.0kb upstream 2.0kb upstream 2000 false Chr03: 14531564-14533563 Phaseolus vulgaris
Phvul.003G084300 2.0kb downstream 2.0kb downstream 3192 true Chr03: 14533564-14536755 Phaseolus vulgaris
Phvul.003G084300 2.0kb downstream 2.0kb downstream 2000 false Chr03: 14534756-14536755 Phaseolus vulgaris
Phvul.003G084300 5.0kb upstream 5.0kb upstream 6192 true Chr03: 14528564-14534755 Phaseolus vulgaris
Phvul.003G084300 5.0kb upstream 5.0kb upstream 5000 false Chr03: 14528564-14533563 Phaseolus vulgaris
Phvul.003G084300 5.0kb downstream 5.0kb downstream 6192 true Chr03: 14533564-14539755 Phaseolus vulgaris
Phvul.003G084300 5.0kb downstream 5.0kb downstream 5000 false Chr03: 14534756-14539755 Phaseolus vulgaris
Phvul.003G084300 10.0kb upstream 10.0kb upstream 11192 true Chr03: 14523564-14534755 Phaseolus vulgaris
Phvul.003G084300 10.0kb upstream 10.0kb upstream 10000 false Chr03: 14523564-14533563 Phaseolus vulgaris
Phvul.003G084300 10.0kb downstream 10.0kb downstream 11192 true Chr03: 14533564-14544755 Phaseolus vulgaris
Phvul.003G084300 10.0kb downstream 10.0kb downstream 10000 false Chr03: 14534756-14544755 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310909 5265 Fabidae View MSA
124072970 5270 Rosid View MSA
123747344 5271 Pentapetalae View MSA
122796590 5272 Eudicot View MSA
122051666 5273 Angiosperm View MSA
121351690 5274 Embryophyte View MSA
123426487 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.10766 0.0 26.0394    
cufflinks 20.2965 0.0 69.8903   High
cufflinks 8.3853 0.0 29.6622    
cufflinks 21.2255 0.0 65.462   High
cufflinks 7.78362 0.0 28.586    
cufflinks 2.90732 0.0 13.7749   Low
cufflinks 3.40081 0.0 15.145    
cufflinks 6.19364 0.0 24.5404    
cufflinks 1.87988 0.0 7.78342   Low
cufflinks 5.06174 0.0 20.5371    
cufflinks 9.65848 0.0 33.381    

0 Strain