Gene : Phvul.003G061602 P. vulgaris v2.1
Defline:  (1 of 1) PTHR24015:SF705 - PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Genomic Order:  636
Name:  ? Phvul.003G061602 Secondary Identifier:  ? PAC:37145789
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G061602 0.5kb upstream 0.5kb upstream 2471 true Chr03: 8528598-8531068 Phaseolus vulgaris
Phvul.003G061602 0.5kb upstream 0.5kb upstream 500 false Chr03: 8530569-8531068 Phaseolus vulgaris
Phvul.003G061602 0.5kb downstream 0.5kb downstream 2471 true Chr03: 8528098-8530568 Phaseolus vulgaris
Phvul.003G061602 0.5kb downstream 0.5kb downstream 500 false Chr03: 8528098-8528597 Phaseolus vulgaris
Phvul.003G061602 1.0kb upstream 1.0kb upstream 2971 true Chr03: 8528598-8531568 Phaseolus vulgaris
Phvul.003G061602 1.0kb upstream 1.0kb upstream 1000 false Chr03: 8530569-8531568 Phaseolus vulgaris
Phvul.003G061602 1.0kb downstream 1.0kb downstream 2971 true Chr03: 8527598-8530568 Phaseolus vulgaris
Phvul.003G061602 1.0kb downstream 1.0kb downstream 1000 false Chr03: 8527598-8528597 Phaseolus vulgaris
Phvul.003G061602 2.0kb upstream 2.0kb upstream 3971 true Chr03: 8528598-8532568 Phaseolus vulgaris
Phvul.003G061602 2.0kb upstream 2.0kb upstream 2000 false Chr03: 8530569-8532568 Phaseolus vulgaris
Phvul.003G061602 2.0kb downstream 2.0kb downstream 3971 true Chr03: 8526598-8530568 Phaseolus vulgaris
Phvul.003G061602 2.0kb downstream 2.0kb downstream 2000 false Chr03: 8526598-8528597 Phaseolus vulgaris
Phvul.003G061602 5.0kb upstream 5.0kb upstream 6971 true Chr03: 8528598-8535568 Phaseolus vulgaris
Phvul.003G061602 5.0kb upstream 5.0kb upstream 5000 false Chr03: 8530569-8535568 Phaseolus vulgaris
Phvul.003G061602 5.0kb downstream 5.0kb downstream 6971 true Chr03: 8523598-8530568 Phaseolus vulgaris
Phvul.003G061602 5.0kb downstream 5.0kb downstream 5000 false Chr03: 8523598-8528597 Phaseolus vulgaris
Phvul.003G061602 10.0kb upstream 10.0kb upstream 11971 true Chr03: 8528598-8540568 Phaseolus vulgaris
Phvul.003G061602 10.0kb upstream 10.0kb upstream 10000 false Chr03: 8530569-8540568 Phaseolus vulgaris
Phvul.003G061602 10.0kb downstream 10.0kb downstream 11971 true Chr03: 8518598-8530568 Phaseolus vulgaris
Phvul.003G061602 10.0kb downstream 10.0kb downstream 10000 false Chr03: 8518598-8528597 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314395 5265 Fabidae View MSA
124037695 5270 Rosid View MSA
123743884 5271 Pentapetalae View MSA
122770801 5272 Eudicot View MSA
122048202 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121310882 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.181673 0.0 0.713149 Low  
cufflinks 0.396765 0.0 1.46284 Low  
cufflinks 0.0267678 0.0 0.125025 Low Low
cufflinks 0.211833 0.0 0.827341 Low  
cufflinks 0.305049 0.0 1.15111 Low  
cufflinks 0.356259 0.0 1.32712 Low  
cufflinks 0.307987 0.0 1.16101 Low  
cufflinks 0.693167 0.0 2.43001   High
cufflinks 0.0954181 0.0 0.395779 Low  
cufflinks 0.684918 0.0 2.39854   High
cufflinks 0.211022 0.0 0.819072 Low  

0 Strain