Gene : Phvul.003G062500 P. vulgaris v2.1
Defline:  (1 of 3) PTHR11850//PTHR11850:SF101 - HOMEOBOX PROTEIN TRANSCRIPTION FACTORS // SUBFAMILY NOT NAMED Genomic Order:  643
Name:  ? Phvul.003G062500 Secondary Identifier:  ? PAC:37145346
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G062500 0.5kb upstream 0.5kb upstream 11574 true Chr03: 8738843-8750416 Phaseolus vulgaris
Phvul.003G062500 0.5kb upstream 0.5kb upstream 500 false Chr03: 8738843-8739342 Phaseolus vulgaris
Phvul.003G062500 0.5kb downstream 0.5kb downstream 11574 true Chr03: 8739343-8750916 Phaseolus vulgaris
Phvul.003G062500 0.5kb downstream 0.5kb downstream 500 false Chr03: 8750417-8750916 Phaseolus vulgaris
Phvul.003G062500 1.0kb upstream 1.0kb upstream 12074 true Chr03: 8738343-8750416 Phaseolus vulgaris
Phvul.003G062500 1.0kb upstream 1.0kb upstream 1000 false Chr03: 8738343-8739342 Phaseolus vulgaris
Phvul.003G062500 1.0kb downstream 1.0kb downstream 12074 true Chr03: 8739343-8751416 Phaseolus vulgaris
Phvul.003G062500 1.0kb downstream 1.0kb downstream 1000 false Chr03: 8750417-8751416 Phaseolus vulgaris
Phvul.003G062500 2.0kb upstream 2.0kb upstream 13074 true Chr03: 8737343-8750416 Phaseolus vulgaris
Phvul.003G062500 2.0kb upstream 2.0kb upstream 2000 false Chr03: 8737343-8739342 Phaseolus vulgaris
Phvul.003G062500 2.0kb downstream 2.0kb downstream 13074 true Chr03: 8739343-8752416 Phaseolus vulgaris
Phvul.003G062500 2.0kb downstream 2.0kb downstream 2000 false Chr03: 8750417-8752416 Phaseolus vulgaris
Phvul.003G062500 5.0kb upstream 5.0kb upstream 16074 true Chr03: 8734343-8750416 Phaseolus vulgaris
Phvul.003G062500 5.0kb upstream 5.0kb upstream 5000 false Chr03: 8734343-8739342 Phaseolus vulgaris
Phvul.003G062500 5.0kb downstream 5.0kb downstream 16074 true Chr03: 8739343-8755416 Phaseolus vulgaris
Phvul.003G062500 5.0kb downstream 5.0kb downstream 5000 false Chr03: 8750417-8755416 Phaseolus vulgaris
Phvul.003G062500 10.0kb upstream 10.0kb upstream 21074 true Chr03: 8729343-8750416 Phaseolus vulgaris
Phvul.003G062500 10.0kb upstream 10.0kb upstream 10000 false Chr03: 8729343-8739342 Phaseolus vulgaris
Phvul.003G062500 10.0kb downstream 10.0kb downstream 21074 true Chr03: 8739343-8760416 Phaseolus vulgaris
Phvul.003G062500 10.0kb downstream 10.0kb downstream 10000 false Chr03: 8750417-8760416 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310769 5265 Fabidae View MSA
124071044 5270 Rosid View MSA
123750536 5271 Pentapetalae View MSA
122794934 5272 Eudicot View MSA
122051072 5273 Angiosperm View MSA
121351483 5274 Embryophyte View MSA
123428758 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.52186 0.0 8.14155    
cufflinks 0.291071 0.0 1.36681 Low  
cufflinks 0.383439 0.0 1.89085 Low  
cufflinks 3.33542 0.0 13.8276    
cufflinks 9.13894 0.0 29.4764   High
cufflinks 0.0308274 0.0 0.155258 Low Low
cufflinks 0.527393 0.0 2.38591 Low  
cufflinks 0.191778 0.0 1.61932 Low  
cufflinks 1.6282 0.0 7.66166    
cufflinks 0.0285264 0.0 0.153801 Low Low
cufflinks 9.05271 0.0 30.3777   High

0 Strain