Gene : Phvul.003G052600 P. vulgaris v2.1
Defline:  (1 of 4) 2.5.1.16 - Spermidine synthase / Putrescine aminopropyltransferase Genomic Order:  540
Name:  ? Phvul.003G052600 Secondary Identifier:  ? PAC:37145795
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris BSUBPOLYAMSYN-PWY Phaseolus vulgaris pathologic  
Pvulgaris POLYAMINSYN3-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-7528 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G052600 0.5kb upstream 0.5kb upstream 4506 true Chr03: 6762693-6767198 Phaseolus vulgaris
Phvul.003G052600 0.5kb upstream 0.5kb upstream 500 false Chr03: 6762693-6763192 Phaseolus vulgaris
Phvul.003G052600 0.5kb downstream 0.5kb downstream 4506 true Chr03: 6763193-6767698 Phaseolus vulgaris
Phvul.003G052600 0.5kb downstream 0.5kb downstream 500 false Chr03: 6767199-6767698 Phaseolus vulgaris
Phvul.003G052600 1.0kb upstream 1.0kb upstream 5006 true Chr03: 6762193-6767198 Phaseolus vulgaris
Phvul.003G052600 1.0kb upstream 1.0kb upstream 1000 false Chr03: 6762193-6763192 Phaseolus vulgaris
Phvul.003G052600 1.0kb downstream 1.0kb downstream 5006 true Chr03: 6763193-6768198 Phaseolus vulgaris
Phvul.003G052600 1.0kb downstream 1.0kb downstream 1000 false Chr03: 6767199-6768198 Phaseolus vulgaris
Phvul.003G052600 2.0kb upstream 2.0kb upstream 6006 true Chr03: 6761193-6767198 Phaseolus vulgaris
Phvul.003G052600 2.0kb upstream 2.0kb upstream 2000 false Chr03: 6761193-6763192 Phaseolus vulgaris
Phvul.003G052600 2.0kb downstream 2.0kb downstream 6006 true Chr03: 6763193-6769198 Phaseolus vulgaris
Phvul.003G052600 2.0kb downstream 2.0kb downstream 2000 false Chr03: 6767199-6769198 Phaseolus vulgaris
Phvul.003G052600 5.0kb upstream 5.0kb upstream 9006 true Chr03: 6758193-6767198 Phaseolus vulgaris
Phvul.003G052600 5.0kb upstream 5.0kb upstream 5000 false Chr03: 6758193-6763192 Phaseolus vulgaris
Phvul.003G052600 5.0kb downstream 5.0kb downstream 9006 true Chr03: 6763193-6772198 Phaseolus vulgaris
Phvul.003G052600 5.0kb downstream 5.0kb downstream 5000 false Chr03: 6767199-6772198 Phaseolus vulgaris
Phvul.003G052600 10.0kb upstream 10.0kb upstream 14006 true Chr03: 6753193-6767198 Phaseolus vulgaris
Phvul.003G052600 10.0kb upstream 10.0kb upstream 10000 false Chr03: 6753193-6763192 Phaseolus vulgaris
Phvul.003G052600 10.0kb downstream 10.0kb downstream 14006 true Chr03: 6763193-6777198 Phaseolus vulgaris
Phvul.003G052600 10.0kb downstream 10.0kb downstream 10000 false Chr03: 6767199-6777198 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309864 5265 Fabidae View MSA
124061949 5270 Rosid View MSA
123741827 5271 Pentapetalae View MSA
122790008 5272 Eudicot View MSA
122043696 5273 Angiosperm View MSA
121346443 5274 Embryophyte View MSA
123424303 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 41.2023 0.0 106.892 High High
cufflinks 25.7228 0.0 66.6003    
cufflinks 37.2539 0.0 96.4607    
cufflinks 58.5601 0.0 153.596 High High
cufflinks 20.4829 0.0 53.4893    
cufflinks 8.52927 0.0 23.6532   Low
cufflinks 14.2833 0.0 37.9499    
cufflinks 11.1011 0.0 30.0078   Low
cufflinks 16.6626 0.0 43.9102    
cufflinks 24.6595 0.0 63.8986    
cufflinks 17.678 0.0 46.4394    

0 Strain