Gene : Phvul.003G055800 P. vulgaris v2.1
Defline:  (1 of 4) 3.4.24.12 - Envelysin / Sea-urchin-hatching proteinase Genomic Order:  575
Name:  ? Phvul.003G055800 Secondary Identifier:  ? PAC:37145427
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G055800 0.5kb upstream 0.5kb upstream 2023 true Chr03: 7314676-7316698 Phaseolus vulgaris
Phvul.003G055800 0.5kb upstream 0.5kb upstream 500 false Chr03: 7316199-7316698 Phaseolus vulgaris
Phvul.003G055800 0.5kb downstream 0.5kb downstream 2023 true Chr03: 7314176-7316198 Phaseolus vulgaris
Phvul.003G055800 0.5kb downstream 0.5kb downstream 500 false Chr03: 7314176-7314675 Phaseolus vulgaris
Phvul.003G055800 1.0kb upstream 1.0kb upstream 2523 true Chr03: 7314676-7317198 Phaseolus vulgaris
Phvul.003G055800 1.0kb upstream 1.0kb upstream 1000 false Chr03: 7316199-7317198 Phaseolus vulgaris
Phvul.003G055800 1.0kb downstream 1.0kb downstream 2523 true Chr03: 7313676-7316198 Phaseolus vulgaris
Phvul.003G055800 1.0kb downstream 1.0kb downstream 1000 false Chr03: 7313676-7314675 Phaseolus vulgaris
Phvul.003G055800 2.0kb upstream 2.0kb upstream 3523 true Chr03: 7314676-7318198 Phaseolus vulgaris
Phvul.003G055800 2.0kb upstream 2.0kb upstream 2000 false Chr03: 7316199-7318198 Phaseolus vulgaris
Phvul.003G055800 2.0kb downstream 2.0kb downstream 3523 true Chr03: 7312676-7316198 Phaseolus vulgaris
Phvul.003G055800 2.0kb downstream 2.0kb downstream 2000 false Chr03: 7312676-7314675 Phaseolus vulgaris
Phvul.003G055800 5.0kb upstream 5.0kb upstream 6523 true Chr03: 7314676-7321198 Phaseolus vulgaris
Phvul.003G055800 5.0kb upstream 5.0kb upstream 5000 false Chr03: 7316199-7321198 Phaseolus vulgaris
Phvul.003G055800 5.0kb downstream 5.0kb downstream 6523 true Chr03: 7309676-7316198 Phaseolus vulgaris
Phvul.003G055800 5.0kb downstream 5.0kb downstream 5000 false Chr03: 7309676-7314675 Phaseolus vulgaris
Phvul.003G055800 10.0kb upstream 10.0kb upstream 11523 true Chr03: 7314676-7326198 Phaseolus vulgaris
Phvul.003G055800 10.0kb upstream 10.0kb upstream 10000 false Chr03: 7316199-7326198 Phaseolus vulgaris
Phvul.003G055800 10.0kb downstream 10.0kb downstream 11523 true Chr03: 7304676-7316198 Phaseolus vulgaris
Phvul.003G055800 10.0kb downstream 10.0kb downstream 10000 false Chr03: 7304676-7314675 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041440 5273 Angiosperm View MSA
122310325 5265 Fabidae View MSA
124061806 5270 Rosid View MSA
123745217 5271 Pentapetalae View MSA
122786222 5272 Eudicot View MSA
121350353 5274 Embryophyte View MSA
123381692 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.2025 0.0 39.8266    
cufflinks 9.8426 0.0 26.6509    
cufflinks 3.58305 0.0 10.8652   Low
cufflinks 8.1891 0.0 22.2704    
cufflinks 10.9418 0.0 29.2414    
cufflinks 19.6619 0.0 51.0876    
cufflinks 36.0326 0.0 93.7276 High High
cufflinks 17.4305 0.0 45.5243    
cufflinks 26.0336 0.0 67.298    
cufflinks 34.4537 0.0 89.336   High
cufflinks 23.5153 0.0 60.7902    

0 Strain