Gene : Phvul.003G055600 P. vulgaris v2.1
Defline:  (1 of 1) PTHR11014//PTHR11014:SF85 - PEPTIDASE M20 FAMILY MEMBER // SUBFAMILY NOT NAMED Genomic Order:  573
Name:  ? Phvul.003G055600 Secondary Identifier:  ? PAC:37145144
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G055600 0.5kb upstream 0.5kb upstream 3459 true Chr03: 7270207-7273665 Phaseolus vulgaris
Phvul.003G055600 0.5kb upstream 0.5kb upstream 500 false Chr03: 7273166-7273665 Phaseolus vulgaris
Phvul.003G055600 0.5kb downstream 0.5kb downstream 3459 true Chr03: 7269707-7273165 Phaseolus vulgaris
Phvul.003G055600 0.5kb downstream 0.5kb downstream 500 false Chr03: 7269707-7270206 Phaseolus vulgaris
Phvul.003G055600 1.0kb upstream 1.0kb upstream 3959 true Chr03: 7270207-7274165 Phaseolus vulgaris
Phvul.003G055600 1.0kb upstream 1.0kb upstream 1000 false Chr03: 7273166-7274165 Phaseolus vulgaris
Phvul.003G055600 1.0kb downstream 1.0kb downstream 3959 true Chr03: 7269207-7273165 Phaseolus vulgaris
Phvul.003G055600 1.0kb downstream 1.0kb downstream 1000 false Chr03: 7269207-7270206 Phaseolus vulgaris
Phvul.003G055600 2.0kb upstream 2.0kb upstream 4959 true Chr03: 7270207-7275165 Phaseolus vulgaris
Phvul.003G055600 2.0kb upstream 2.0kb upstream 2000 false Chr03: 7273166-7275165 Phaseolus vulgaris
Phvul.003G055600 2.0kb downstream 2.0kb downstream 4959 true Chr03: 7268207-7273165 Phaseolus vulgaris
Phvul.003G055600 2.0kb downstream 2.0kb downstream 2000 false Chr03: 7268207-7270206 Phaseolus vulgaris
Phvul.003G055600 5.0kb upstream 5.0kb upstream 7959 true Chr03: 7270207-7278165 Phaseolus vulgaris
Phvul.003G055600 5.0kb upstream 5.0kb upstream 5000 false Chr03: 7273166-7278165 Phaseolus vulgaris
Phvul.003G055600 5.0kb downstream 5.0kb downstream 7959 true Chr03: 7265207-7273165 Phaseolus vulgaris
Phvul.003G055600 5.0kb downstream 5.0kb downstream 5000 false Chr03: 7265207-7270206 Phaseolus vulgaris
Phvul.003G055600 10.0kb upstream 10.0kb upstream 12959 true Chr03: 7270207-7283165 Phaseolus vulgaris
Phvul.003G055600 10.0kb upstream 10.0kb upstream 10000 false Chr03: 7273166-7283165 Phaseolus vulgaris
Phvul.003G055600 10.0kb downstream 10.0kb downstream 12959 true Chr03: 7260207-7273165 Phaseolus vulgaris
Phvul.003G055600 10.0kb downstream 10.0kb downstream 10000 false Chr03: 7260207-7270206 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303487 5265 Fabidae View MSA
124050601 5270 Rosid View MSA
123745487 5271 Pentapetalae View MSA
122795050 5272 Eudicot View MSA
122047186 5273 Angiosperm View MSA
121350602 5274 Embryophyte View MSA
123427442 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 24.7557 0.0 64.0353   High
cufflinks 6.32446 0.0 17.8622    
cufflinks 12.9216 0.0 34.3692    
cufflinks 17.8255 0.0 46.6865   High
cufflinks 5.90066 0.0 16.8892    
cufflinks 5.65155 0.0 16.1408    
cufflinks 10.2833 0.0 27.7799    
cufflinks 4.71013 0.0 13.6638   Low
cufflinks 12.4848 0.0 33.2584    
cufflinks 4.77752 0.0 13.9245   Low
cufflinks 7.87207 0.0 21.8703    

0 Strain