Gene : Phvul.003G055200 P. vulgaris v2.1
Defline:  (1 of 2) K12832 - splicing factor 3B subunit 5 (SF3B5, SF3B10) Genomic Order:  569
Name:  ? Phvul.003G055200 Secondary Identifier:  ? PAC:37147448
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G055200 0.5kb upstream 0.5kb upstream 2644 true Chr03: 7226235-7228878 Phaseolus vulgaris
Phvul.003G055200 0.5kb upstream 0.5kb upstream 500 false Chr03: 7228379-7228878 Phaseolus vulgaris
Phvul.003G055200 0.5kb downstream 0.5kb downstream 2644 true Chr03: 7225735-7228378 Phaseolus vulgaris
Phvul.003G055200 0.5kb downstream 0.5kb downstream 500 false Chr03: 7225735-7226234 Phaseolus vulgaris
Phvul.003G055200 1.0kb upstream 1.0kb upstream 3144 true Chr03: 7226235-7229378 Phaseolus vulgaris
Phvul.003G055200 1.0kb upstream 1.0kb upstream 1000 false Chr03: 7228379-7229378 Phaseolus vulgaris
Phvul.003G055200 1.0kb downstream 1.0kb downstream 3144 true Chr03: 7225235-7228378 Phaseolus vulgaris
Phvul.003G055200 1.0kb downstream 1.0kb downstream 1000 false Chr03: 7225235-7226234 Phaseolus vulgaris
Phvul.003G055200 2.0kb upstream 2.0kb upstream 4144 true Chr03: 7226235-7230378 Phaseolus vulgaris
Phvul.003G055200 2.0kb upstream 2.0kb upstream 2000 false Chr03: 7228379-7230378 Phaseolus vulgaris
Phvul.003G055200 2.0kb downstream 2.0kb downstream 4144 true Chr03: 7224235-7228378 Phaseolus vulgaris
Phvul.003G055200 2.0kb downstream 2.0kb downstream 2000 false Chr03: 7224235-7226234 Phaseolus vulgaris
Phvul.003G055200 5.0kb upstream 5.0kb upstream 7144 true Chr03: 7226235-7233378 Phaseolus vulgaris
Phvul.003G055200 5.0kb upstream 5.0kb upstream 5000 false Chr03: 7228379-7233378 Phaseolus vulgaris
Phvul.003G055200 5.0kb downstream 5.0kb downstream 7144 true Chr03: 7221235-7228378 Phaseolus vulgaris
Phvul.003G055200 5.0kb downstream 5.0kb downstream 5000 false Chr03: 7221235-7226234 Phaseolus vulgaris
Phvul.003G055200 10.0kb upstream 10.0kb upstream 12144 true Chr03: 7226235-7238378 Phaseolus vulgaris
Phvul.003G055200 10.0kb upstream 10.0kb upstream 10000 false Chr03: 7228379-7238378 Phaseolus vulgaris
Phvul.003G055200 10.0kb downstream 10.0kb downstream 12144 true Chr03: 7216235-7228378 Phaseolus vulgaris
Phvul.003G055200 10.0kb downstream 10.0kb downstream 10000 false Chr03: 7216235-7226234 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027648 5273 Angiosperm View MSA
122312316 5265 Fabidae View MSA
124069097 5270 Rosid View MSA
123746421 5271 Pentapetalae View MSA
122791090 5272 Eudicot View MSA
123428927 5275 Viridiplantae View MSA
121347588 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 27.9388 0.0 78.0166   High
cufflinks 16.9064 0.0 49.7103    
cufflinks 21.4843 0.0 61.3687    
cufflinks 31.0531 0.0 86.2371   High
cufflinks 12.449 0.0 38.221    
cufflinks 16.6385 0.0 48.9571    
cufflinks 12.8525 0.0 39.1003    
cufflinks 18.721 0.0 54.2078    
cufflinks 16.916 0.0 49.9873    
cufflinks 9.16716 0.0 28.9882   Low
cufflinks 12.0593 0.0 37.1885    

0 Strain