Gene : Phvul.003G058800 P. vulgaris v2.1
Defline:  (1 of 3) PTHR12565//PTHR12565:SF181 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  606
Name:  ? Phvul.003G058800 Secondary Identifier:  ? PAC:37144680
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G058800 0.5kb upstream 0.5kb upstream 4077 true Chr03: 8003596-8007672 Phaseolus vulgaris
Phvul.003G058800 0.5kb upstream 0.5kb upstream 500 false Chr03: 8007173-8007672 Phaseolus vulgaris
Phvul.003G058800 0.5kb downstream 0.5kb downstream 4077 true Chr03: 8003096-8007172 Phaseolus vulgaris
Phvul.003G058800 0.5kb downstream 0.5kb downstream 500 false Chr03: 8003096-8003595 Phaseolus vulgaris
Phvul.003G058800 1.0kb upstream 1.0kb upstream 4577 true Chr03: 8003596-8008172 Phaseolus vulgaris
Phvul.003G058800 1.0kb upstream 1.0kb upstream 1000 false Chr03: 8007173-8008172 Phaseolus vulgaris
Phvul.003G058800 1.0kb downstream 1.0kb downstream 4577 true Chr03: 8002596-8007172 Phaseolus vulgaris
Phvul.003G058800 1.0kb downstream 1.0kb downstream 1000 false Chr03: 8002596-8003595 Phaseolus vulgaris
Phvul.003G058800 2.0kb upstream 2.0kb upstream 5577 true Chr03: 8003596-8009172 Phaseolus vulgaris
Phvul.003G058800 2.0kb upstream 2.0kb upstream 2000 false Chr03: 8007173-8009172 Phaseolus vulgaris
Phvul.003G058800 2.0kb downstream 2.0kb downstream 5577 true Chr03: 8001596-8007172 Phaseolus vulgaris
Phvul.003G058800 2.0kb downstream 2.0kb downstream 2000 false Chr03: 8001596-8003595 Phaseolus vulgaris
Phvul.003G058800 5.0kb upstream 5.0kb upstream 8577 true Chr03: 8003596-8012172 Phaseolus vulgaris
Phvul.003G058800 5.0kb upstream 5.0kb upstream 5000 false Chr03: 8007173-8012172 Phaseolus vulgaris
Phvul.003G058800 5.0kb downstream 5.0kb downstream 8577 true Chr03: 7998596-8007172 Phaseolus vulgaris
Phvul.003G058800 5.0kb downstream 5.0kb downstream 5000 false Chr03: 7998596-8003595 Phaseolus vulgaris
Phvul.003G058800 10.0kb upstream 10.0kb upstream 13577 true Chr03: 8003596-8017172 Phaseolus vulgaris
Phvul.003G058800 10.0kb upstream 10.0kb upstream 10000 false Chr03: 8007173-8017172 Phaseolus vulgaris
Phvul.003G058800 10.0kb downstream 10.0kb downstream 13577 true Chr03: 7993596-8007172 Phaseolus vulgaris
Phvul.003G058800 10.0kb downstream 10.0kb downstream 10000 false Chr03: 7993596-8003595 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302460 5265 Fabidae View MSA
124070822 5270 Rosid View MSA
123748515 5271 Pentapetalae View MSA
122793981 5272 Eudicot View MSA
122048947 5273 Angiosperm View MSA
121351451 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 36.5667 0.0 94.5205 High High
cufflinks 12.1241 0.0 33.1686    
cufflinks 1.5369 0.0 5.22644   Low
cufflinks 6.84349 0.0 19.8552    
cufflinks 7.48784 0.0 21.5581    
cufflinks 3.26999 0.0 10.2532   Low
cufflinks 22.858 0.0 59.7851    
cufflinks 21.9014 0.0 57.3111    
cufflinks 42.3313 0.0 109.457 High High
cufflinks 14.9989 0.0 40.3575    
cufflinks 6.76577 0.0 19.6662    

0 Strain