Gene : Phvul.003G045200 P. vulgaris v2.1
Defline:  (1 of 1) PTHR11615:SF81 - CASPARIAN STRIP MEMBRANE PROTEIN 5 Genomic Order:  460
Name:  ? Phvul.003G045200 Secondary Identifier:  ? PAC:37148034
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G045200 0.5kb upstream 0.5kb upstream 2684 true Chr03: 5301999-5304682 Phaseolus vulgaris
Phvul.003G045200 0.5kb upstream 0.5kb upstream 500 false Chr03: 5301999-5302498 Phaseolus vulgaris
Phvul.003G045200 0.5kb downstream 0.5kb downstream 2684 true Chr03: 5302499-5305182 Phaseolus vulgaris
Phvul.003G045200 0.5kb downstream 0.5kb downstream 500 false Chr03: 5304683-5305182 Phaseolus vulgaris
Phvul.003G045200 1.0kb upstream 1.0kb upstream 3184 true Chr03: 5301499-5304682 Phaseolus vulgaris
Phvul.003G045200 1.0kb upstream 1.0kb upstream 1000 false Chr03: 5301499-5302498 Phaseolus vulgaris
Phvul.003G045200 1.0kb downstream 1.0kb downstream 3184 true Chr03: 5302499-5305682 Phaseolus vulgaris
Phvul.003G045200 1.0kb downstream 1.0kb downstream 1000 false Chr03: 5304683-5305682 Phaseolus vulgaris
Phvul.003G045200 2.0kb upstream 2.0kb upstream 4184 true Chr03: 5300499-5304682 Phaseolus vulgaris
Phvul.003G045200 2.0kb upstream 2.0kb upstream 2000 false Chr03: 5300499-5302498 Phaseolus vulgaris
Phvul.003G045200 2.0kb downstream 2.0kb downstream 4184 true Chr03: 5302499-5306682 Phaseolus vulgaris
Phvul.003G045200 2.0kb downstream 2.0kb downstream 2000 false Chr03: 5304683-5306682 Phaseolus vulgaris
Phvul.003G045200 5.0kb upstream 5.0kb upstream 7184 true Chr03: 5297499-5304682 Phaseolus vulgaris
Phvul.003G045200 5.0kb upstream 5.0kb upstream 5000 false Chr03: 5297499-5302498 Phaseolus vulgaris
Phvul.003G045200 5.0kb downstream 5.0kb downstream 7184 true Chr03: 5302499-5309682 Phaseolus vulgaris
Phvul.003G045200 5.0kb downstream 5.0kb downstream 5000 false Chr03: 5304683-5309682 Phaseolus vulgaris
Phvul.003G045200 10.0kb upstream 10.0kb upstream 12184 true Chr03: 5292499-5304682 Phaseolus vulgaris
Phvul.003G045200 10.0kb upstream 10.0kb upstream 10000 false Chr03: 5292499-5302498 Phaseolus vulgaris
Phvul.003G045200 10.0kb downstream 10.0kb downstream 12184 true Chr03: 5302499-5314682 Phaseolus vulgaris
Phvul.003G045200 10.0kb downstream 10.0kb downstream 10000 false Chr03: 5304683-5314682 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313827 5265 Fabidae View MSA
124050355 5270 Rosid View MSA
123746908 5271 Pentapetalae View MSA
122797470 5272 Eudicot View MSA
122046070 5273 Angiosperm View MSA
121351638 5274 Embryophyte View MSA
123382256 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0468514 0.0 1.31929 Low Low
cufflinks 0.0446188 0.0 1.58234 Low Low
cufflinks 0.240995 0.0 12.614 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.485131 0.0 5.60403 Low  
cufflinks 0.309897 0.0 6.76706 Low  
cufflinks 6.52266 0.0 21.2176   High
cufflinks 3.83909 0.0 13.9967    
cufflinks 20.252 0.0 64.0903   High
cufflinks 0.123282 0.0 3.52586 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed

0 Strain