Gene : Phvul.003G047900 P. vulgaris v2.1
Defline:  (1 of 6) K00588 - caffeoyl-CoA O-methyltransferase (E2.1.1.104) Genomic Order:  488
Name:  ? Phvul.003G047900 Secondary Identifier:  ? PAC:37148069
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-1121 Phaseolus vulgaris pathologic  
Pvulgaris PWY-361 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G047900 0.5kb upstream 0.5kb upstream 2306 true Chr03: 5911749-5914054 Phaseolus vulgaris
Phvul.003G047900 0.5kb upstream 0.5kb upstream 500 false Chr03: 5913555-5914054 Phaseolus vulgaris
Phvul.003G047900 0.5kb downstream 0.5kb downstream 2306 true Chr03: 5911249-5913554 Phaseolus vulgaris
Phvul.003G047900 0.5kb downstream 0.5kb downstream 500 false Chr03: 5911249-5911748 Phaseolus vulgaris
Phvul.003G047900 1.0kb upstream 1.0kb upstream 2806 true Chr03: 5911749-5914554 Phaseolus vulgaris
Phvul.003G047900 1.0kb upstream 1.0kb upstream 1000 false Chr03: 5913555-5914554 Phaseolus vulgaris
Phvul.003G047900 1.0kb downstream 1.0kb downstream 2806 true Chr03: 5910749-5913554 Phaseolus vulgaris
Phvul.003G047900 1.0kb downstream 1.0kb downstream 1000 false Chr03: 5910749-5911748 Phaseolus vulgaris
Phvul.003G047900 2.0kb upstream 2.0kb upstream 3806 true Chr03: 5911749-5915554 Phaseolus vulgaris
Phvul.003G047900 2.0kb upstream 2.0kb upstream 2000 false Chr03: 5913555-5915554 Phaseolus vulgaris
Phvul.003G047900 2.0kb downstream 2.0kb downstream 3806 true Chr03: 5909749-5913554 Phaseolus vulgaris
Phvul.003G047900 2.0kb downstream 2.0kb downstream 2000 false Chr03: 5909749-5911748 Phaseolus vulgaris
Phvul.003G047900 5.0kb upstream 5.0kb upstream 6806 true Chr03: 5911749-5918554 Phaseolus vulgaris
Phvul.003G047900 5.0kb upstream 5.0kb upstream 5000 false Chr03: 5913555-5918554 Phaseolus vulgaris
Phvul.003G047900 5.0kb downstream 5.0kb downstream 6806 true Chr03: 5906749-5913554 Phaseolus vulgaris
Phvul.003G047900 5.0kb downstream 5.0kb downstream 5000 false Chr03: 5906749-5911748 Phaseolus vulgaris
Phvul.003G047900 10.0kb upstream 10.0kb upstream 11806 true Chr03: 5911749-5923554 Phaseolus vulgaris
Phvul.003G047900 10.0kb upstream 10.0kb upstream 10000 false Chr03: 5913555-5923554 Phaseolus vulgaris
Phvul.003G047900 10.0kb downstream 10.0kb downstream 11806 true Chr03: 5901749-5913554 Phaseolus vulgaris
Phvul.003G047900 10.0kb downstream 10.0kb downstream 10000 false Chr03: 5901749-5911748 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303546 5265 Fabidae View MSA
124070061 5270 Rosid View MSA
123746911 5271 Pentapetalae View MSA
122790683 5272 Eudicot View MSA
122043643 5273 Angiosperm View MSA
121346702 5274 Embryophyte View MSA
123427843 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 106.393 0.0 285.477 High  
cufflinks 43.7986 0.0 113.222 High Low
cufflinks 61.6674 0.0 160.182 High Low
cufflinks 137.617 0.0 376.728 High  
cufflinks 476.506 0.0 1550.73 High High
cufflinks 120.169 0.0 324.563 High  
cufflinks 237.826 0.0 691.996 High  
cufflinks 68.7493 0.0 178.971 High  
cufflinks 213.263 0.0 611.841 High  
cufflinks 235.848 0.0 684.054 High  
cufflinks 825.682 0.0 3014.1 High High

0 Strain