Gene : Phvul.003G048500 P. vulgaris v2.1
Defline:  (1 of 2) PTHR33270:SF5 - GB Genomic Order:  498
Name:  ? Phvul.003G048500 Secondary Identifier:  ? PAC:37146457
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G048500 0.5kb upstream 0.5kb upstream 1836 true Chr03: 6042858-6044693 Phaseolus vulgaris
Phvul.003G048500 0.5kb upstream 0.5kb upstream 500 false Chr03: 6042858-6043357 Phaseolus vulgaris
Phvul.003G048500 0.5kb downstream 0.5kb downstream 1836 true Chr03: 6043358-6045193 Phaseolus vulgaris
Phvul.003G048500 0.5kb downstream 0.5kb downstream 500 false Chr03: 6044694-6045193 Phaseolus vulgaris
Phvul.003G048500 1.0kb upstream 1.0kb upstream 2336 true Chr03: 6042358-6044693 Phaseolus vulgaris
Phvul.003G048500 1.0kb upstream 1.0kb upstream 1000 false Chr03: 6042358-6043357 Phaseolus vulgaris
Phvul.003G048500 1.0kb downstream 1.0kb downstream 2336 true Chr03: 6043358-6045693 Phaseolus vulgaris
Phvul.003G048500 1.0kb downstream 1.0kb downstream 1000 false Chr03: 6044694-6045693 Phaseolus vulgaris
Phvul.003G048500 2.0kb upstream 2.0kb upstream 3336 true Chr03: 6041358-6044693 Phaseolus vulgaris
Phvul.003G048500 2.0kb upstream 2.0kb upstream 2000 false Chr03: 6041358-6043357 Phaseolus vulgaris
Phvul.003G048500 2.0kb downstream 2.0kb downstream 3336 true Chr03: 6043358-6046693 Phaseolus vulgaris
Phvul.003G048500 2.0kb downstream 2.0kb downstream 2000 false Chr03: 6044694-6046693 Phaseolus vulgaris
Phvul.003G048500 5.0kb upstream 5.0kb upstream 6336 true Chr03: 6038358-6044693 Phaseolus vulgaris
Phvul.003G048500 5.0kb upstream 5.0kb upstream 5000 false Chr03: 6038358-6043357 Phaseolus vulgaris
Phvul.003G048500 5.0kb downstream 5.0kb downstream 6336 true Chr03: 6043358-6049693 Phaseolus vulgaris
Phvul.003G048500 5.0kb downstream 5.0kb downstream 5000 false Chr03: 6044694-6049693 Phaseolus vulgaris
Phvul.003G048500 10.0kb upstream 10.0kb upstream 11336 true Chr03: 6033358-6044693 Phaseolus vulgaris
Phvul.003G048500 10.0kb upstream 10.0kb upstream 10000 false Chr03: 6033358-6043357 Phaseolus vulgaris
Phvul.003G048500 10.0kb downstream 10.0kb downstream 11336 true Chr03: 6043358-6054693 Phaseolus vulgaris
Phvul.003G048500 10.0kb downstream 10.0kb downstream 10000 false Chr03: 6044694-6054693 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304471 5265 Fabidae View MSA
124068577 5270 Rosid View MSA
123740302 5271 Pentapetalae View MSA
122797585 5272 Eudicot View MSA
122049795 5273 Angiosperm View MSA
121311591 5274 Embryophyte View MSA
123348867 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.5944 0.0 37.7554   High
cufflinks 8.89796 0.0 25.6987    
cufflinks 2.41351 0.0 8.10443   Low
cufflinks 19.9494 0.0 53.8535   High
cufflinks 9.16718 0.0 26.4476    
cufflinks 6.52002 0.0 19.5197    
cufflinks 4.83001 0.0 14.8606    
cufflinks 4.54069 0.0 14.1528    
cufflinks 4.21826 0.0 13.1915    
cufflinks 2.56554 0.0 8.54184   Low
cufflinks 11.4605 0.0 32.1621    

0 Strain