Gene : Phvul.003G168200 P. vulgaris v2.1
Defline:  (1 of 1) PTHR10891//PTHR10891:SF546 - EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  1706
Name:  ? Phvul.003G168200 Secondary Identifier:  ? PAC:37146882
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Ontology Annotation Displayer

0 Pathways

Genomics

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Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G168200 0.5kb upstream 0.5kb upstream 1184 true Chr03: 38895188-38896371 Phaseolus vulgaris
Phvul.003G168200 0.5kb upstream 0.5kb upstream 500 false Chr03: 38895872-38896371 Phaseolus vulgaris
Phvul.003G168200 0.5kb downstream 0.5kb downstream 1184 true Chr03: 38894688-38895871 Phaseolus vulgaris
Phvul.003G168200 0.5kb downstream 0.5kb downstream 500 false Chr03: 38894688-38895187 Phaseolus vulgaris
Phvul.003G168200 1.0kb upstream 1.0kb upstream 1684 true Chr03: 38895188-38896871 Phaseolus vulgaris
Phvul.003G168200 1.0kb upstream 1.0kb upstream 1000 false Chr03: 38895872-38896871 Phaseolus vulgaris
Phvul.003G168200 1.0kb downstream 1.0kb downstream 1684 true Chr03: 38894188-38895871 Phaseolus vulgaris
Phvul.003G168200 1.0kb downstream 1.0kb downstream 1000 false Chr03: 38894188-38895187 Phaseolus vulgaris
Phvul.003G168200 2.0kb upstream 2.0kb upstream 2684 true Chr03: 38895188-38897871 Phaseolus vulgaris
Phvul.003G168200 2.0kb upstream 2.0kb upstream 2000 false Chr03: 38895872-38897871 Phaseolus vulgaris
Phvul.003G168200 2.0kb downstream 2.0kb downstream 2684 true Chr03: 38893188-38895871 Phaseolus vulgaris
Phvul.003G168200 2.0kb downstream 2.0kb downstream 2000 false Chr03: 38893188-38895187 Phaseolus vulgaris
Phvul.003G168200 5.0kb upstream 5.0kb upstream 5684 true Chr03: 38895188-38900871 Phaseolus vulgaris
Phvul.003G168200 5.0kb upstream 5.0kb upstream 5000 false Chr03: 38895872-38900871 Phaseolus vulgaris
Phvul.003G168200 5.0kb downstream 5.0kb downstream 5684 true Chr03: 38890188-38895871 Phaseolus vulgaris
Phvul.003G168200 5.0kb downstream 5.0kb downstream 5000 false Chr03: 38890188-38895187 Phaseolus vulgaris
Phvul.003G168200 10.0kb upstream 10.0kb upstream 10684 true Chr03: 38895188-38905871 Phaseolus vulgaris
Phvul.003G168200 10.0kb upstream 10.0kb upstream 10000 false Chr03: 38895872-38905871 Phaseolus vulgaris
Phvul.003G168200 10.0kb downstream 10.0kb downstream 10684 true Chr03: 38885188-38895871 Phaseolus vulgaris
Phvul.003G168200 10.0kb downstream 10.0kb downstream 10000 false Chr03: 38885188-38895187 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028011 5273 Angiosperm View MSA
122302288 5265 Fabidae View MSA
124071091 5270 Rosid View MSA
123752599 5271 Pentapetalae View MSA
122791242 5272 Eudicot View MSA
123429169 5275 Viridiplantae View MSA
121350734 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 43.5932 0.0 112.93 High High
cufflinks 5.91406 0.0 18.2204    
cufflinks 3.94907 0.0 12.7651    
cufflinks 22.7089 0.0 61.3743   High
cufflinks 4.88742 0.0 15.611    
cufflinks 5.31319 0.0 16.543    
cufflinks 11.1234 0.0 31.6458    
cufflinks 8.16149 0.0 24.1627    
cufflinks 4.97459 0.0 15.5059    
cufflinks 1.87151 0.0 6.62785   Low
cufflinks 11.8022 0.0 33.7058    

0 Strain