Gene : Phvul.003G111000 P. vulgaris v2.1
Defline:  (1 of 1) PTHR12947:SF4 - REGULATOR OF FREE UBIQUITIN CHAINS 1 Genomic Order:  1120
Name:  ? Phvul.003G111000 Secondary Identifier:  ? PAC:37145594
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G111000 0.5kb upstream 0.5kb upstream 8443 true Chr03: 28447499-28455941 Phaseolus vulgaris
Phvul.003G111000 0.5kb upstream 0.5kb upstream 500 false Chr03: 28455442-28455941 Phaseolus vulgaris
Phvul.003G111000 0.5kb downstream 0.5kb downstream 8443 true Chr03: 28446999-28455441 Phaseolus vulgaris
Phvul.003G111000 0.5kb downstream 0.5kb downstream 500 false Chr03: 28446999-28447498 Phaseolus vulgaris
Phvul.003G111000 1.0kb upstream 1.0kb upstream 8943 true Chr03: 28447499-28456441 Phaseolus vulgaris
Phvul.003G111000 1.0kb upstream 1.0kb upstream 1000 false Chr03: 28455442-28456441 Phaseolus vulgaris
Phvul.003G111000 1.0kb downstream 1.0kb downstream 8943 true Chr03: 28446499-28455441 Phaseolus vulgaris
Phvul.003G111000 1.0kb downstream 1.0kb downstream 1000 false Chr03: 28446499-28447498 Phaseolus vulgaris
Phvul.003G111000 2.0kb upstream 2.0kb upstream 9943 true Chr03: 28447499-28457441 Phaseolus vulgaris
Phvul.003G111000 2.0kb upstream 2.0kb upstream 2000 false Chr03: 28455442-28457441 Phaseolus vulgaris
Phvul.003G111000 2.0kb downstream 2.0kb downstream 9943 true Chr03: 28445499-28455441 Phaseolus vulgaris
Phvul.003G111000 2.0kb downstream 2.0kb downstream 2000 false Chr03: 28445499-28447498 Phaseolus vulgaris
Phvul.003G111000 5.0kb upstream 5.0kb upstream 12943 true Chr03: 28447499-28460441 Phaseolus vulgaris
Phvul.003G111000 5.0kb upstream 5.0kb upstream 5000 false Chr03: 28455442-28460441 Phaseolus vulgaris
Phvul.003G111000 5.0kb downstream 5.0kb downstream 12943 true Chr03: 28442499-28455441 Phaseolus vulgaris
Phvul.003G111000 5.0kb downstream 5.0kb downstream 5000 false Chr03: 28442499-28447498 Phaseolus vulgaris
Phvul.003G111000 10.0kb upstream 10.0kb upstream 17943 true Chr03: 28447499-28465441 Phaseolus vulgaris
Phvul.003G111000 10.0kb upstream 10.0kb upstream 10000 false Chr03: 28455442-28465441 Phaseolus vulgaris
Phvul.003G111000 10.0kb downstream 10.0kb downstream 17943 true Chr03: 28437499-28455441 Phaseolus vulgaris
Phvul.003G111000 10.0kb downstream 10.0kb downstream 10000 false Chr03: 28437499-28447498 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303741 5265 Fabidae View MSA
124061741 5270 Rosid View MSA
123740701 5271 Pentapetalae View MSA
122792659 5272 Eudicot View MSA
122049356 5273 Angiosperm View MSA
121351478 5274 Embryophyte View MSA
123425499 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.6601 0.0 49.3795   High
cufflinks 8.86106 0.0 32.3643    
cufflinks 8.89529 0.0 32.0106    
cufflinks 8.75738 0.0 27.4576    
cufflinks 7.23691 0.0 27.7972   Low
cufflinks 7.56128 0.0 28.2678   Low
cufflinks 9.53875 0.0 34.0902    
cufflinks 9.96217 0.0 34.9933    
cufflinks 9.26702 0.0 33.3535    
cufflinks 13.8434 0.0 46.4394   High
cufflinks 8.73206 0.0 32.2225    

0 Strain