Gene : Phvul.003G154500 P. vulgaris v2.1
Defline:  (1 of 1) K15210 - snRNA-activating protein complex subunit 3 (SNAPC3) Genomic Order:  1568
Name:  ? Phvul.003G154500 Secondary Identifier:  ? PAC:37146973
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G154500 0.5kb upstream 0.5kb upstream 13373 true Chr03: 37010280-37023652 Phaseolus vulgaris
Phvul.003G154500 0.5kb upstream 0.5kb upstream 500 false Chr03: 37010280-37010779 Phaseolus vulgaris
Phvul.003G154500 0.5kb downstream 0.5kb downstream 13373 true Chr03: 37010780-37024152 Phaseolus vulgaris
Phvul.003G154500 0.5kb downstream 0.5kb downstream 500 false Chr03: 37023653-37024152 Phaseolus vulgaris
Phvul.003G154500 1.0kb upstream 1.0kb upstream 13873 true Chr03: 37009780-37023652 Phaseolus vulgaris
Phvul.003G154500 1.0kb upstream 1.0kb upstream 1000 false Chr03: 37009780-37010779 Phaseolus vulgaris
Phvul.003G154500 1.0kb downstream 1.0kb downstream 13873 true Chr03: 37010780-37024652 Phaseolus vulgaris
Phvul.003G154500 1.0kb downstream 1.0kb downstream 1000 false Chr03: 37023653-37024652 Phaseolus vulgaris
Phvul.003G154500 2.0kb upstream 2.0kb upstream 14873 true Chr03: 37008780-37023652 Phaseolus vulgaris
Phvul.003G154500 2.0kb upstream 2.0kb upstream 2000 false Chr03: 37008780-37010779 Phaseolus vulgaris
Phvul.003G154500 2.0kb downstream 2.0kb downstream 14873 true Chr03: 37010780-37025652 Phaseolus vulgaris
Phvul.003G154500 2.0kb downstream 2.0kb downstream 2000 false Chr03: 37023653-37025652 Phaseolus vulgaris
Phvul.003G154500 5.0kb upstream 5.0kb upstream 17873 true Chr03: 37005780-37023652 Phaseolus vulgaris
Phvul.003G154500 5.0kb upstream 5.0kb upstream 5000 false Chr03: 37005780-37010779 Phaseolus vulgaris
Phvul.003G154500 5.0kb downstream 5.0kb downstream 17873 true Chr03: 37010780-37028652 Phaseolus vulgaris
Phvul.003G154500 5.0kb downstream 5.0kb downstream 5000 false Chr03: 37023653-37028652 Phaseolus vulgaris
Phvul.003G154500 10.0kb upstream 10.0kb upstream 22873 true Chr03: 37000780-37023652 Phaseolus vulgaris
Phvul.003G154500 10.0kb upstream 10.0kb upstream 10000 false Chr03: 37000780-37010779 Phaseolus vulgaris
Phvul.003G154500 10.0kb downstream 10.0kb downstream 22873 true Chr03: 37010780-37033652 Phaseolus vulgaris
Phvul.003G154500 10.0kb downstream 10.0kb downstream 10000 false Chr03: 37023653-37033652 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299313 5265 Fabidae View MSA
124050343 5270 Rosid View MSA
123737692 5271 Pentapetalae View MSA
122795479 5272 Eudicot View MSA
122043985 5273 Angiosperm View MSA
121347836 5274 Embryophyte View MSA
123424819 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.27708 0.0 18.5476    
cufflinks 3.96255 0.0 13.7999    
cufflinks 4.83944 0.0 16.0962   High
cufflinks 2.5714 0.0 10.542   Low
cufflinks 3.20643 0.0 12.0587    
cufflinks 3.81445 0.0 16.232    
cufflinks 4.27934 0.0 14.5905    
cufflinks 3.65397 0.0 13.1518    
cufflinks 4.54248 0.0 15.3035    
cufflinks 5.54955 0.0 31.6284   High
cufflinks 3.34361 0.0 14.9903    

0 Strain