Gene : Phvul.003G157300 P. vulgaris v2.1
Defline:  (1 of 1) PTHR12775 - PROTEIN C20ORF43 HOMOLOG Genomic Order:  1599
Name:  ? Phvul.003G157300 Secondary Identifier:  ? PAC:37145324
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G157300 0.5kb upstream 0.5kb upstream 1868 true Chr03: 37368776-37370643 Phaseolus vulgaris
Phvul.003G157300 0.5kb upstream 0.5kb upstream 500 false Chr03: 37368776-37369275 Phaseolus vulgaris
Phvul.003G157300 0.5kb downstream 0.5kb downstream 1868 true Chr03: 37369276-37371143 Phaseolus vulgaris
Phvul.003G157300 0.5kb downstream 0.5kb downstream 500 false Chr03: 37370644-37371143 Phaseolus vulgaris
Phvul.003G157300 1.0kb upstream 1.0kb upstream 2368 true Chr03: 37368276-37370643 Phaseolus vulgaris
Phvul.003G157300 1.0kb upstream 1.0kb upstream 1000 false Chr03: 37368276-37369275 Phaseolus vulgaris
Phvul.003G157300 1.0kb downstream 1.0kb downstream 2368 true Chr03: 37369276-37371643 Phaseolus vulgaris
Phvul.003G157300 1.0kb downstream 1.0kb downstream 1000 false Chr03: 37370644-37371643 Phaseolus vulgaris
Phvul.003G157300 2.0kb upstream 2.0kb upstream 3368 true Chr03: 37367276-37370643 Phaseolus vulgaris
Phvul.003G157300 2.0kb upstream 2.0kb upstream 2000 false Chr03: 37367276-37369275 Phaseolus vulgaris
Phvul.003G157300 2.0kb downstream 2.0kb downstream 3368 true Chr03: 37369276-37372643 Phaseolus vulgaris
Phvul.003G157300 2.0kb downstream 2.0kb downstream 2000 false Chr03: 37370644-37372643 Phaseolus vulgaris
Phvul.003G157300 5.0kb upstream 5.0kb upstream 6368 true Chr03: 37364276-37370643 Phaseolus vulgaris
Phvul.003G157300 5.0kb upstream 5.0kb upstream 5000 false Chr03: 37364276-37369275 Phaseolus vulgaris
Phvul.003G157300 5.0kb downstream 5.0kb downstream 6368 true Chr03: 37369276-37375643 Phaseolus vulgaris
Phvul.003G157300 5.0kb downstream 5.0kb downstream 5000 false Chr03: 37370644-37375643 Phaseolus vulgaris
Phvul.003G157300 10.0kb upstream 10.0kb upstream 11368 true Chr03: 37359276-37370643 Phaseolus vulgaris
Phvul.003G157300 10.0kb upstream 10.0kb upstream 10000 false Chr03: 37359276-37369275 Phaseolus vulgaris
Phvul.003G157300 10.0kb downstream 10.0kb downstream 11368 true Chr03: 37369276-37380643 Phaseolus vulgaris
Phvul.003G157300 10.0kb downstream 10.0kb downstream 10000 false Chr03: 37370644-37380643 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308220 5265 Fabidae View MSA
124066786 5270 Rosid View MSA
123747269 5271 Pentapetalae View MSA
122787080 5272 Eudicot View MSA
122046209 5273 Angiosperm View MSA
121350063 5274 Embryophyte View MSA
123426844 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 36.9505 0.0 96.0303 High High
cufflinks 22.908 0.0 59.2921    
cufflinks 18.3263 0.0 47.7429    
cufflinks 41.2427 0.0 107.277 High High
cufflinks 24.7256 0.0 63.9357    
cufflinks 17.8659 0.0 46.5438   Low
cufflinks 18.86 0.0 48.9833    
cufflinks 20.5618 0.0 53.3321    
cufflinks 22.5214 0.0 58.3006    
cufflinks 21.2133 0.0 54.9691    
cufflinks 25.9232 0.0 67.0084    

0 Strain