Gene : Phvul.003G160000 P. vulgaris v2.1
Defline:  (1 of 3) PTHR22891//PTHR22891:SF25 - EUKARYOTIC TRANSLATION INITIATION FACTOR 2C // SUBFAMILY NOT NAMED Genomic Order:  1626
Name:  ? Phvul.003G160000 Secondary Identifier:  ? PAC:37148138
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G160000 0.5kb upstream 0.5kb upstream 8029 true Chr03: 37801529-37809557 Phaseolus vulgaris
Phvul.003G160000 0.5kb upstream 0.5kb upstream 500 false Chr03: 37801529-37802028 Phaseolus vulgaris
Phvul.003G160000 0.5kb downstream 0.5kb downstream 8029 true Chr03: 37802029-37810057 Phaseolus vulgaris
Phvul.003G160000 0.5kb downstream 0.5kb downstream 500 false Chr03: 37809558-37810057 Phaseolus vulgaris
Phvul.003G160000 1.0kb upstream 1.0kb upstream 8529 true Chr03: 37801029-37809557 Phaseolus vulgaris
Phvul.003G160000 1.0kb upstream 1.0kb upstream 1000 false Chr03: 37801029-37802028 Phaseolus vulgaris
Phvul.003G160000 1.0kb downstream 1.0kb downstream 8529 true Chr03: 37802029-37810557 Phaseolus vulgaris
Phvul.003G160000 1.0kb downstream 1.0kb downstream 1000 false Chr03: 37809558-37810557 Phaseolus vulgaris
Phvul.003G160000 2.0kb upstream 2.0kb upstream 9529 true Chr03: 37800029-37809557 Phaseolus vulgaris
Phvul.003G160000 2.0kb upstream 2.0kb upstream 2000 false Chr03: 37800029-37802028 Phaseolus vulgaris
Phvul.003G160000 2.0kb downstream 2.0kb downstream 9529 true Chr03: 37802029-37811557 Phaseolus vulgaris
Phvul.003G160000 2.0kb downstream 2.0kb downstream 2000 false Chr03: 37809558-37811557 Phaseolus vulgaris
Phvul.003G160000 5.0kb upstream 5.0kb upstream 12529 true Chr03: 37797029-37809557 Phaseolus vulgaris
Phvul.003G160000 5.0kb upstream 5.0kb upstream 5000 false Chr03: 37797029-37802028 Phaseolus vulgaris
Phvul.003G160000 5.0kb downstream 5.0kb downstream 12529 true Chr03: 37802029-37814557 Phaseolus vulgaris
Phvul.003G160000 5.0kb downstream 5.0kb downstream 5000 false Chr03: 37809558-37814557 Phaseolus vulgaris
Phvul.003G160000 10.0kb upstream 10.0kb upstream 17529 true Chr03: 37792029-37809557 Phaseolus vulgaris
Phvul.003G160000 10.0kb upstream 10.0kb upstream 10000 false Chr03: 37792029-37802028 Phaseolus vulgaris
Phvul.003G160000 10.0kb downstream 10.0kb downstream 17529 true Chr03: 37802029-37819557 Phaseolus vulgaris
Phvul.003G160000 10.0kb downstream 10.0kb downstream 10000 false Chr03: 37809558-37819557 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121791835 5273 Angiosperm View MSA
122253770 5265 Fabidae View MSA
124070971 5270 Rosid View MSA
123742845 5271 Pentapetalae View MSA
122794533 5272 Eudicot View MSA
121352100 5274 Embryophyte View MSA
123382541 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.736045 0.0 2.41154    
cufflinks 3.10961 0.0 8.68648   High
cufflinks 1.2998 0.0 3.97254    
cufflinks 0.274042 0.0 1.00369 Low Low
cufflinks 1.89314 0.0 5.61617    
cufflinks 6.19421 0.0 16.3501   High
cufflinks 0.828366 0.0 2.67316    
cufflinks 0.459333 0.0 1.57578    
cufflinks 0.528352 0.0 1.79819    
cufflinks 0.321763 0.0 1.15346 Low Low
cufflinks 2.89804 0.0 8.19123    

0 Strain