Gene : Phvul.003G160400 P. vulgaris v2.1
Defline:  (1 of 2) PTHR31561:SF3 - 3-KETOACYL-COA SYNTHASE 11 Genomic Order:  1630
Name:  ? Phvul.003G160400 Secondary Identifier:  ? PAC:37147329
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-5080 Phaseolus vulgaris pathologic  
Pvulgaris PWY-6433 Phaseolus vulgaris pathologic  
Pvulgaris PWY-6598 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7036 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7601 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7606 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7619 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G160400 0.5kb upstream 0.5kb upstream 3108 true Chr03: 37851931-37855038 Phaseolus vulgaris
Phvul.003G160400 0.5kb upstream 0.5kb upstream 500 false Chr03: 37851931-37852430 Phaseolus vulgaris
Phvul.003G160400 0.5kb downstream 0.5kb downstream 3108 true Chr03: 37852431-37855538 Phaseolus vulgaris
Phvul.003G160400 0.5kb downstream 0.5kb downstream 500 false Chr03: 37855039-37855538 Phaseolus vulgaris
Phvul.003G160400 1.0kb upstream 1.0kb upstream 3608 true Chr03: 37851431-37855038 Phaseolus vulgaris
Phvul.003G160400 1.0kb upstream 1.0kb upstream 1000 false Chr03: 37851431-37852430 Phaseolus vulgaris
Phvul.003G160400 1.0kb downstream 1.0kb downstream 3608 true Chr03: 37852431-37856038 Phaseolus vulgaris
Phvul.003G160400 1.0kb downstream 1.0kb downstream 1000 false Chr03: 37855039-37856038 Phaseolus vulgaris
Phvul.003G160400 2.0kb upstream 2.0kb upstream 4608 true Chr03: 37850431-37855038 Phaseolus vulgaris
Phvul.003G160400 2.0kb upstream 2.0kb upstream 2000 false Chr03: 37850431-37852430 Phaseolus vulgaris
Phvul.003G160400 2.0kb downstream 2.0kb downstream 4608 true Chr03: 37852431-37857038 Phaseolus vulgaris
Phvul.003G160400 2.0kb downstream 2.0kb downstream 2000 false Chr03: 37855039-37857038 Phaseolus vulgaris
Phvul.003G160400 5.0kb upstream 5.0kb upstream 7608 true Chr03: 37847431-37855038 Phaseolus vulgaris
Phvul.003G160400 5.0kb upstream 5.0kb upstream 5000 false Chr03: 37847431-37852430 Phaseolus vulgaris
Phvul.003G160400 5.0kb downstream 5.0kb downstream 7608 true Chr03: 37852431-37860038 Phaseolus vulgaris
Phvul.003G160400 5.0kb downstream 5.0kb downstream 5000 false Chr03: 37855039-37860038 Phaseolus vulgaris
Phvul.003G160400 10.0kb upstream 10.0kb upstream 12608 true Chr03: 37842431-37855038 Phaseolus vulgaris
Phvul.003G160400 10.0kb upstream 10.0kb upstream 10000 false Chr03: 37842431-37852430 Phaseolus vulgaris
Phvul.003G160400 10.0kb downstream 10.0kb downstream 12608 true Chr03: 37852431-37865038 Phaseolus vulgaris
Phvul.003G160400 10.0kb downstream 10.0kb downstream 10000 false Chr03: 37855039-37865038 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310983 5265 Fabidae View MSA
124069691 5270 Rosid View MSA
123752157 5271 Pentapetalae View MSA
122789250 5272 Eudicot View MSA
122044783 5273 Angiosperm View MSA
121349296 5274 Embryophyte View MSA
123425974 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.2127 0.0 14.8678   Low
cufflinks 17.5695 0.0 45.7122    
cufflinks 8.38525 0.0 22.8551    
cufflinks 12.198 0.0 32.4134    
cufflinks 12.8968 0.0 34.1812    
cufflinks 22.7627 0.0 58.8826   High
cufflinks 9.27809 0.0 25.1473    
cufflinks 11.8731 0.0 31.5217    
cufflinks 21.3653 0.0 55.341   High
cufflinks 4.20941 0.0 12.2999   Low
cufflinks 16.4997 0.0 43.1116    

0 Strain