Gene : Phvul.003G152600 P. vulgaris v2.1
Defline:  (1 of 1) PTHR12169:SF6 - LACTATION ELEVATED PROTEIN 1 Genomic Order:  1549
Name:  ? Phvul.003G152600 Secondary Identifier:  ? PAC:37146136
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris ANAEROFRUCAT-PWY Phaseolus vulgaris pathologic  
Pvulgaris ANAGLYCOLYSIS-PWY Phaseolus vulgaris pathologic  
Pvulgaris GLUCOSE1PMETAB-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-621 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7238 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G152600 0.5kb upstream 0.5kb upstream 6394 true Chr03: 36750698-36757091 Phaseolus vulgaris
Phvul.003G152600 0.5kb upstream 0.5kb upstream 500 false Chr03: 36756592-36757091 Phaseolus vulgaris
Phvul.003G152600 0.5kb downstream 0.5kb downstream 6394 true Chr03: 36750198-36756591 Phaseolus vulgaris
Phvul.003G152600 0.5kb downstream 0.5kb downstream 500 false Chr03: 36750198-36750697 Phaseolus vulgaris
Phvul.003G152600 1.0kb upstream 1.0kb upstream 6894 true Chr03: 36750698-36757591 Phaseolus vulgaris
Phvul.003G152600 1.0kb upstream 1.0kb upstream 1000 false Chr03: 36756592-36757591 Phaseolus vulgaris
Phvul.003G152600 1.0kb downstream 1.0kb downstream 6894 true Chr03: 36749698-36756591 Phaseolus vulgaris
Phvul.003G152600 1.0kb downstream 1.0kb downstream 1000 false Chr03: 36749698-36750697 Phaseolus vulgaris
Phvul.003G152600 2.0kb upstream 2.0kb upstream 7894 true Chr03: 36750698-36758591 Phaseolus vulgaris
Phvul.003G152600 2.0kb upstream 2.0kb upstream 2000 false Chr03: 36756592-36758591 Phaseolus vulgaris
Phvul.003G152600 2.0kb downstream 2.0kb downstream 7894 true Chr03: 36748698-36756591 Phaseolus vulgaris
Phvul.003G152600 2.0kb downstream 2.0kb downstream 2000 false Chr03: 36748698-36750697 Phaseolus vulgaris
Phvul.003G152600 5.0kb upstream 5.0kb upstream 10894 true Chr03: 36750698-36761591 Phaseolus vulgaris
Phvul.003G152600 5.0kb upstream 5.0kb upstream 5000 false Chr03: 36756592-36761591 Phaseolus vulgaris
Phvul.003G152600 5.0kb downstream 5.0kb downstream 10894 true Chr03: 36745698-36756591 Phaseolus vulgaris
Phvul.003G152600 5.0kb downstream 5.0kb downstream 5000 false Chr03: 36745698-36750697 Phaseolus vulgaris
Phvul.003G152600 10.0kb upstream 10.0kb upstream 15894 true Chr03: 36750698-36766591 Phaseolus vulgaris
Phvul.003G152600 10.0kb upstream 10.0kb upstream 10000 false Chr03: 36756592-36766591 Phaseolus vulgaris
Phvul.003G152600 10.0kb downstream 10.0kb downstream 15894 true Chr03: 36740698-36756591 Phaseolus vulgaris
Phvul.003G152600 10.0kb downstream 10.0kb downstream 10000 false Chr03: 36740698-36750697 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304744 5265 Fabidae View MSA
124061792 5270 Rosid View MSA
123752091 5271 Pentapetalae View MSA
122793026 5272 Eudicot View MSA
122047660 5273 Angiosperm View MSA
121344773 5274 Embryophyte View MSA
123427307 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.2413 0.0 72.8459   High
cufflinks 9.03376 0.0 45.6068    
cufflinks 9.8478 0.0 38.899    
cufflinks 12.3176 0.0 56.5868    
cufflinks 7.42445 0.0 26.9795   Low
cufflinks 8.24706 0.0 37.5206   Low
cufflinks 15.5087 0.0 61.7608   High
cufflinks 11.5907 0.0 61.5237    
cufflinks 12.8398 0.0 52.6465    
cufflinks 17.2317 0.0 68.7438   High
cufflinks 8.50486 0.0 38.2396    

0 Strain