Gene : Phvul.003G139600 P. vulgaris v2.1
Defline:  (1 of 6) PTHR31752:SF4 - AUXIN EFFLUX CARRIER COMPONENT 2 Genomic Order:  1426
Name:  ? Phvul.003G139600 Secondary Identifier:  ? PAC:37147303
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G139600 0.5kb upstream 0.5kb upstream 3569 true Chr03: 34315797-34319365 Phaseolus vulgaris
Phvul.003G139600 0.5kb upstream 0.5kb upstream 500 false Chr03: 34318866-34319365 Phaseolus vulgaris
Phvul.003G139600 0.5kb downstream 0.5kb downstream 3569 true Chr03: 34315297-34318865 Phaseolus vulgaris
Phvul.003G139600 0.5kb downstream 0.5kb downstream 500 false Chr03: 34315297-34315796 Phaseolus vulgaris
Phvul.003G139600 1.0kb upstream 1.0kb upstream 4069 true Chr03: 34315797-34319865 Phaseolus vulgaris
Phvul.003G139600 1.0kb upstream 1.0kb upstream 1000 false Chr03: 34318866-34319865 Phaseolus vulgaris
Phvul.003G139600 1.0kb downstream 1.0kb downstream 4069 true Chr03: 34314797-34318865 Phaseolus vulgaris
Phvul.003G139600 1.0kb downstream 1.0kb downstream 1000 false Chr03: 34314797-34315796 Phaseolus vulgaris
Phvul.003G139600 2.0kb upstream 2.0kb upstream 5069 true Chr03: 34315797-34320865 Phaseolus vulgaris
Phvul.003G139600 2.0kb upstream 2.0kb upstream 2000 false Chr03: 34318866-34320865 Phaseolus vulgaris
Phvul.003G139600 2.0kb downstream 2.0kb downstream 5069 true Chr03: 34313797-34318865 Phaseolus vulgaris
Phvul.003G139600 2.0kb downstream 2.0kb downstream 2000 false Chr03: 34313797-34315796 Phaseolus vulgaris
Phvul.003G139600 5.0kb upstream 5.0kb upstream 8069 true Chr03: 34315797-34323865 Phaseolus vulgaris
Phvul.003G139600 5.0kb upstream 5.0kb upstream 5000 false Chr03: 34318866-34323865 Phaseolus vulgaris
Phvul.003G139600 5.0kb downstream 5.0kb downstream 8069 true Chr03: 34310797-34318865 Phaseolus vulgaris
Phvul.003G139600 5.0kb downstream 5.0kb downstream 5000 false Chr03: 34310797-34315796 Phaseolus vulgaris
Phvul.003G139600 10.0kb upstream 10.0kb upstream 13069 true Chr03: 34315797-34328865 Phaseolus vulgaris
Phvul.003G139600 10.0kb upstream 10.0kb upstream 10000 false Chr03: 34318866-34328865 Phaseolus vulgaris
Phvul.003G139600 10.0kb downstream 10.0kb downstream 13069 true Chr03: 34305797-34318865 Phaseolus vulgaris
Phvul.003G139600 10.0kb downstream 10.0kb downstream 10000 false Chr03: 34305797-34315796 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304711 5265 Fabidae View MSA
124063005 5270 Rosid View MSA
123747112 5271 Pentapetalae View MSA
122796951 5272 Eudicot View MSA
122046141 5273 Angiosperm View MSA
121351759 5274 Embryophyte View MSA
123382310 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0716715 0.0 0.301992 Low  
cufflinks 0.953659 0.0 3.1956    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0270799 0.0 0.12579 Low Low
cufflinks 0.630905 0.0 2.22107    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 7.90524 0.0 21.1911   High
cufflinks 1.89212 0.0 5.84277    
cufflinks 23.2345 0.0 60.1317   High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.145395 0.0 0.57929 Low  

0 Strain