Gene : Phvul.003G140452 P. vulgaris v2.1
Defline:  (1 of 1) PTHR23216 - NUCLEOLAR AND COILED-BODY PHOSPHOPROTEIN 1 Genomic Order:  1419
Name:  ? Phvul.003G140452 Secondary Identifier:  ? PAC:37147135
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G140452 0.5kb upstream 0.5kb upstream 4927 true Chr03: 34207432-34212358 Phaseolus vulgaris
Phvul.003G140452 0.5kb upstream 0.5kb upstream 500 false Chr03: 34207432-34207931 Phaseolus vulgaris
Phvul.003G140452 0.5kb downstream 0.5kb downstream 4927 true Chr03: 34207932-34212858 Phaseolus vulgaris
Phvul.003G140452 0.5kb downstream 0.5kb downstream 500 false Chr03: 34212359-34212858 Phaseolus vulgaris
Phvul.003G140452 1.0kb upstream 1.0kb upstream 5427 true Chr03: 34206932-34212358 Phaseolus vulgaris
Phvul.003G140452 1.0kb upstream 1.0kb upstream 1000 false Chr03: 34206932-34207931 Phaseolus vulgaris
Phvul.003G140452 1.0kb downstream 1.0kb downstream 5427 true Chr03: 34207932-34213358 Phaseolus vulgaris
Phvul.003G140452 1.0kb downstream 1.0kb downstream 1000 false Chr03: 34212359-34213358 Phaseolus vulgaris
Phvul.003G140452 2.0kb upstream 2.0kb upstream 6427 true Chr03: 34205932-34212358 Phaseolus vulgaris
Phvul.003G140452 2.0kb upstream 2.0kb upstream 2000 false Chr03: 34205932-34207931 Phaseolus vulgaris
Phvul.003G140452 2.0kb downstream 2.0kb downstream 6427 true Chr03: 34207932-34214358 Phaseolus vulgaris
Phvul.003G140452 2.0kb downstream 2.0kb downstream 2000 false Chr03: 34212359-34214358 Phaseolus vulgaris
Phvul.003G140452 5.0kb upstream 5.0kb upstream 9427 true Chr03: 34202932-34212358 Phaseolus vulgaris
Phvul.003G140452 5.0kb upstream 5.0kb upstream 5000 false Chr03: 34202932-34207931 Phaseolus vulgaris
Phvul.003G140452 5.0kb downstream 5.0kb downstream 9427 true Chr03: 34207932-34217358 Phaseolus vulgaris
Phvul.003G140452 5.0kb downstream 5.0kb downstream 5000 false Chr03: 34212359-34217358 Phaseolus vulgaris
Phvul.003G140452 10.0kb upstream 10.0kb upstream 14427 true Chr03: 34197932-34212358 Phaseolus vulgaris
Phvul.003G140452 10.0kb upstream 10.0kb upstream 10000 false Chr03: 34197932-34207931 Phaseolus vulgaris
Phvul.003G140452 10.0kb downstream 10.0kb downstream 14427 true Chr03: 34207932-34222358 Phaseolus vulgaris
Phvul.003G140452 10.0kb downstream 10.0kb downstream 10000 false Chr03: 34212359-34222358 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304301 5265 Fabidae View MSA
124071277 5270 Rosid View MSA
123738497 5271 Pentapetalae View MSA
122794212 5272 Eudicot View MSA
122048501 5273 Angiosperm View MSA
121348991 5274 Embryophyte View MSA
123425594 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.15996 0.0 22.219    
cufflinks 13.5957 0.0 35.7921    
cufflinks 9.38421 0.0 25.3013    
cufflinks 4.95143 0.0 14.3304   Low
cufflinks 9.86074 0.0 26.8352    
cufflinks 6.03686 0.0 16.943   Low
cufflinks 14.0774 0.0 36.9066    
cufflinks 17.9799 0.0 46.607   High
cufflinks 18.5604 0.0 48.1517   High
cufflinks 16.1943 0.0 42.2922    
cufflinks 9.38682 0.0 25.5108    

0 Strain