Gene : Phvul.003G145300 P. vulgaris v2.1
Defline:  (1 of 1) K06085 - synovial sarcoma, X breakpoint 2 interacting protein (SSX2IP, ADIP) Genomic Order:  1475
Name:  ? Phvul.003G145300 Secondary Identifier:  ? PAC:37147511
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G145300 0.5kb upstream 0.5kb upstream 6237 true Chr03: 35426869-35433105 Phaseolus vulgaris
Phvul.003G145300 0.5kb upstream 0.5kb upstream 500 false Chr03: 35432606-35433105 Phaseolus vulgaris
Phvul.003G145300 0.5kb downstream 0.5kb downstream 6237 true Chr03: 35426369-35432605 Phaseolus vulgaris
Phvul.003G145300 0.5kb downstream 0.5kb downstream 500 false Chr03: 35426369-35426868 Phaseolus vulgaris
Phvul.003G145300 1.0kb upstream 1.0kb upstream 6737 true Chr03: 35426869-35433605 Phaseolus vulgaris
Phvul.003G145300 1.0kb upstream 1.0kb upstream 1000 false Chr03: 35432606-35433605 Phaseolus vulgaris
Phvul.003G145300 1.0kb downstream 1.0kb downstream 6737 true Chr03: 35425869-35432605 Phaseolus vulgaris
Phvul.003G145300 1.0kb downstream 1.0kb downstream 1000 false Chr03: 35425869-35426868 Phaseolus vulgaris
Phvul.003G145300 2.0kb upstream 2.0kb upstream 7737 true Chr03: 35426869-35434605 Phaseolus vulgaris
Phvul.003G145300 2.0kb upstream 2.0kb upstream 2000 false Chr03: 35432606-35434605 Phaseolus vulgaris
Phvul.003G145300 2.0kb downstream 2.0kb downstream 7737 true Chr03: 35424869-35432605 Phaseolus vulgaris
Phvul.003G145300 2.0kb downstream 2.0kb downstream 2000 false Chr03: 35424869-35426868 Phaseolus vulgaris
Phvul.003G145300 5.0kb upstream 5.0kb upstream 10737 true Chr03: 35426869-35437605 Phaseolus vulgaris
Phvul.003G145300 5.0kb upstream 5.0kb upstream 5000 false Chr03: 35432606-35437605 Phaseolus vulgaris
Phvul.003G145300 5.0kb downstream 5.0kb downstream 10737 true Chr03: 35421869-35432605 Phaseolus vulgaris
Phvul.003G145300 5.0kb downstream 5.0kb downstream 5000 false Chr03: 35421869-35426868 Phaseolus vulgaris
Phvul.003G145300 10.0kb upstream 10.0kb upstream 15737 true Chr03: 35426869-35442605 Phaseolus vulgaris
Phvul.003G145300 10.0kb upstream 10.0kb upstream 10000 false Chr03: 35432606-35442605 Phaseolus vulgaris
Phvul.003G145300 10.0kb downstream 10.0kb downstream 15737 true Chr03: 35416869-35432605 Phaseolus vulgaris
Phvul.003G145300 10.0kb downstream 10.0kb downstream 10000 false Chr03: 35416869-35426868 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300466 5265 Fabidae View MSA
124065967 5270 Rosid View MSA
123745771 5271 Pentapetalae View MSA
122786516 5272 Eudicot View MSA
122043605 5273 Angiosperm View MSA
121344783 5274 Embryophyte View MSA
123426997 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.0454 0.0 24.3796   Low
cufflinks 19.0517 0.0 49.3503   High
cufflinks 14.4508 0.0 37.7445    
cufflinks 14.2908 0.0 37.5312    
cufflinks 10.3296 0.0 27.7601    
cufflinks 20.4935 0.0 53.014   High
cufflinks 12.3256 0.0 32.4349    
cufflinks 12.5699 0.0 32.9641    
cufflinks 8.90122 0.0 23.994   Low
cufflinks 9.81472 0.0 26.3472    
cufflinks 15.8941 0.0 41.4653    

0 Strain