Gene : Phvul.003G134000 P. vulgaris v2.1
Defline:  (1 of 2) PTHR10052//PTHR10052:SF11 - 60S RIBOSOMAL PROTEIN L18A // SUBFAMILY NOT NAMED Genomic Order:  1346
Name:  ? Phvul.003G134000 Secondary Identifier:  ? PAC:37147319
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G134000 0.5kb upstream 0.5kb upstream 5514 true Chr03: 33080108-33085621 Phaseolus vulgaris
Phvul.003G134000 0.5kb upstream 0.5kb upstream 500 false Chr03: 33085122-33085621 Phaseolus vulgaris
Phvul.003G134000 0.5kb downstream 0.5kb downstream 5514 true Chr03: 33079608-33085121 Phaseolus vulgaris
Phvul.003G134000 0.5kb downstream 0.5kb downstream 500 false Chr03: 33079608-33080107 Phaseolus vulgaris
Phvul.003G134000 1.0kb upstream 1.0kb upstream 6014 true Chr03: 33080108-33086121 Phaseolus vulgaris
Phvul.003G134000 1.0kb upstream 1.0kb upstream 1000 false Chr03: 33085122-33086121 Phaseolus vulgaris
Phvul.003G134000 1.0kb downstream 1.0kb downstream 6014 true Chr03: 33079108-33085121 Phaseolus vulgaris
Phvul.003G134000 1.0kb downstream 1.0kb downstream 1000 false Chr03: 33079108-33080107 Phaseolus vulgaris
Phvul.003G134000 2.0kb upstream 2.0kb upstream 7014 true Chr03: 33080108-33087121 Phaseolus vulgaris
Phvul.003G134000 2.0kb upstream 2.0kb upstream 2000 false Chr03: 33085122-33087121 Phaseolus vulgaris
Phvul.003G134000 2.0kb downstream 2.0kb downstream 7014 true Chr03: 33078108-33085121 Phaseolus vulgaris
Phvul.003G134000 2.0kb downstream 2.0kb downstream 2000 false Chr03: 33078108-33080107 Phaseolus vulgaris
Phvul.003G134000 5.0kb upstream 5.0kb upstream 10014 true Chr03: 33080108-33090121 Phaseolus vulgaris
Phvul.003G134000 5.0kb upstream 5.0kb upstream 5000 false Chr03: 33085122-33090121 Phaseolus vulgaris
Phvul.003G134000 5.0kb downstream 5.0kb downstream 10014 true Chr03: 33075108-33085121 Phaseolus vulgaris
Phvul.003G134000 5.0kb downstream 5.0kb downstream 5000 false Chr03: 33075108-33080107 Phaseolus vulgaris
Phvul.003G134000 10.0kb upstream 10.0kb upstream 15014 true Chr03: 33080108-33095121 Phaseolus vulgaris
Phvul.003G134000 10.0kb upstream 10.0kb upstream 10000 false Chr03: 33085122-33095121 Phaseolus vulgaris
Phvul.003G134000 10.0kb downstream 10.0kb downstream 15014 true Chr03: 33070108-33085121 Phaseolus vulgaris
Phvul.003G134000 10.0kb downstream 10.0kb downstream 10000 false Chr03: 33070108-33080107 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027441 5273 Angiosperm View MSA
122311030 5265 Fabidae View MSA
124066289 5270 Rosid View MSA
123745455 5271 Pentapetalae View MSA
122796236 5272 Eudicot View MSA
121350597 5274 Embryophyte View MSA
123425775 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 24.4828 0.0 79.8334   High
cufflinks 5.53277 0.0 20.9297    
cufflinks 7.92002 0.0 32.4351    
cufflinks 16.1533 0.0 57.2324   High
cufflinks 6.38142 0.0 24.9927    
cufflinks 4.8696 0.0 16.1195   Low
cufflinks 6.94648 0.0 25.052    
cufflinks 14.2385 0.0 51.0474   High
cufflinks 6.55936 0.0 25.4259    
cufflinks 6.08966 0.0 19.3847    
cufflinks 5.62973 0.0 21.9528    

0 Strain