Gene : Phvul.003G136600 P. vulgaris v2.1
Defline:  (1 of 5) PF05553//PF14364 - Cotton fibre expressed protein (DUF761) // Domain of unknown function (DUF4408) (DUF4408) Genomic Order:  1370
Name:  ? Phvul.003G136600 Secondary Identifier:  ? PAC:37146108
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G136600 0.5kb upstream 0.5kb upstream 1833 true Chr03: 33443347-33445179 Phaseolus vulgaris
Phvul.003G136600 0.5kb upstream 0.5kb upstream 500 false Chr03: 33444680-33445179 Phaseolus vulgaris
Phvul.003G136600 0.5kb downstream 0.5kb downstream 1833 true Chr03: 33442847-33444679 Phaseolus vulgaris
Phvul.003G136600 0.5kb downstream 0.5kb downstream 500 false Chr03: 33442847-33443346 Phaseolus vulgaris
Phvul.003G136600 1.0kb upstream 1.0kb upstream 2333 true Chr03: 33443347-33445679 Phaseolus vulgaris
Phvul.003G136600 1.0kb upstream 1.0kb upstream 1000 false Chr03: 33444680-33445679 Phaseolus vulgaris
Phvul.003G136600 1.0kb downstream 1.0kb downstream 2333 true Chr03: 33442347-33444679 Phaseolus vulgaris
Phvul.003G136600 1.0kb downstream 1.0kb downstream 1000 false Chr03: 33442347-33443346 Phaseolus vulgaris
Phvul.003G136600 2.0kb upstream 2.0kb upstream 3333 true Chr03: 33443347-33446679 Phaseolus vulgaris
Phvul.003G136600 2.0kb upstream 2.0kb upstream 2000 false Chr03: 33444680-33446679 Phaseolus vulgaris
Phvul.003G136600 2.0kb downstream 2.0kb downstream 3333 true Chr03: 33441347-33444679 Phaseolus vulgaris
Phvul.003G136600 2.0kb downstream 2.0kb downstream 2000 false Chr03: 33441347-33443346 Phaseolus vulgaris
Phvul.003G136600 5.0kb upstream 5.0kb upstream 6333 true Chr03: 33443347-33449679 Phaseolus vulgaris
Phvul.003G136600 5.0kb upstream 5.0kb upstream 5000 false Chr03: 33444680-33449679 Phaseolus vulgaris
Phvul.003G136600 5.0kb downstream 5.0kb downstream 6333 true Chr03: 33438347-33444679 Phaseolus vulgaris
Phvul.003G136600 5.0kb downstream 5.0kb downstream 5000 false Chr03: 33438347-33443346 Phaseolus vulgaris
Phvul.003G136600 10.0kb upstream 10.0kb upstream 11333 true Chr03: 33443347-33454679 Phaseolus vulgaris
Phvul.003G136600 10.0kb upstream 10.0kb upstream 10000 false Chr03: 33444680-33454679 Phaseolus vulgaris
Phvul.003G136600 10.0kb downstream 10.0kb downstream 11333 true Chr03: 33433347-33444679 Phaseolus vulgaris
Phvul.003G136600 10.0kb downstream 10.0kb downstream 10000 false Chr03: 33433347-33443346 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309435 5265 Fabidae View MSA
124071784 5270 Rosid View MSA
123749105 5271 Pentapetalae View MSA
122787298 5272 Eudicot View MSA
122041618 5273 Angiosperm View MSA
121309871 5274 Embryophyte View MSA
123347511 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.1824 0.0 62.6983    
cufflinks 46.2626 0.0 149.838 High  
cufflinks 9.90082 0.0 31.237    
cufflinks 140.085 0.0 494.065 High High
cufflinks 27.7976 0.0 77.658    
cufflinks 22.5722 0.0 72.8853    
cufflinks 8.78574 0.0 27.7705    
cufflinks 1.71626 0.0 6.44177   Low
cufflinks 10.089 0.0 31.0992    
cufflinks 7.38451 0.0 24.5162    
cufflinks 53.331 0.0 187.9 High  

0 Strain