Gene : Phvul.003G139152 P. vulgaris v2.1
Defline:  (1 of 3) K17435 - large subunit ribosomal protein L54 (MRPL54) Genomic Order:  1437
Name:  ? Phvul.003G139152 Secondary Identifier:  ? PAC:37148039
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G139152 0.5kb upstream 0.5kb upstream 2927 true Chr03: 34416211-34419137 Phaseolus vulgaris
Phvul.003G139152 0.5kb upstream 0.5kb upstream 500 false Chr03: 34418638-34419137 Phaseolus vulgaris
Phvul.003G139152 0.5kb downstream 0.5kb downstream 2927 true Chr03: 34415711-34418637 Phaseolus vulgaris
Phvul.003G139152 0.5kb downstream 0.5kb downstream 500 false Chr03: 34415711-34416210 Phaseolus vulgaris
Phvul.003G139152 1.0kb upstream 1.0kb upstream 3427 true Chr03: 34416211-34419637 Phaseolus vulgaris
Phvul.003G139152 1.0kb upstream 1.0kb upstream 1000 false Chr03: 34418638-34419637 Phaseolus vulgaris
Phvul.003G139152 1.0kb downstream 1.0kb downstream 3427 true Chr03: 34415211-34418637 Phaseolus vulgaris
Phvul.003G139152 1.0kb downstream 1.0kb downstream 1000 false Chr03: 34415211-34416210 Phaseolus vulgaris
Phvul.003G139152 2.0kb upstream 2.0kb upstream 4427 true Chr03: 34416211-34420637 Phaseolus vulgaris
Phvul.003G139152 2.0kb upstream 2.0kb upstream 2000 false Chr03: 34418638-34420637 Phaseolus vulgaris
Phvul.003G139152 2.0kb downstream 2.0kb downstream 4427 true Chr03: 34414211-34418637 Phaseolus vulgaris
Phvul.003G139152 2.0kb downstream 2.0kb downstream 2000 false Chr03: 34414211-34416210 Phaseolus vulgaris
Phvul.003G139152 5.0kb upstream 5.0kb upstream 7427 true Chr03: 34416211-34423637 Phaseolus vulgaris
Phvul.003G139152 5.0kb upstream 5.0kb upstream 5000 false Chr03: 34418638-34423637 Phaseolus vulgaris
Phvul.003G139152 5.0kb downstream 5.0kb downstream 7427 true Chr03: 34411211-34418637 Phaseolus vulgaris
Phvul.003G139152 5.0kb downstream 5.0kb downstream 5000 false Chr03: 34411211-34416210 Phaseolus vulgaris
Phvul.003G139152 10.0kb upstream 10.0kb upstream 12427 true Chr03: 34416211-34428637 Phaseolus vulgaris
Phvul.003G139152 10.0kb upstream 10.0kb upstream 10000 false Chr03: 34418638-34428637 Phaseolus vulgaris
Phvul.003G139152 10.0kb downstream 10.0kb downstream 12427 true Chr03: 34406211-34418637 Phaseolus vulgaris
Phvul.003G139152 10.0kb downstream 10.0kb downstream 10000 false Chr03: 34406211-34416210 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305928 5265 Fabidae View MSA
124060646 5270 Rosid View MSA
123747142 5271 Pentapetalae View MSA
122795702 5272 Eudicot View MSA
122046066 5273 Angiosperm View MSA
121350806 5274 Embryophyte View MSA
123425089 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.0674 0.0 69.0492   High
cufflinks 17.5649 0.0 59.8813    
cufflinks 9.65847 0.0 37.8907   Low
cufflinks 18.6293 0.0 72.3535    
cufflinks 11.5864 0.0 44.4148    
cufflinks 8.63867 0.0 34.942   Low
cufflinks 14.1037 0.0 50.1697    
cufflinks 15.1017 0.0 52.7242    
cufflinks 14.7274 0.0 52.161    
cufflinks 14.2663 0.0 51.343    
cufflinks 16.1363 0.0 56.6508    

0 Strain