Gene : Phvul.003G121500 P. vulgaris v2.1
Defline:  (1 of 1) PTHR21262:SF12 - CA2+-ACTIVATED RELA/SPOT-LIKE PROTEIN Genomic Order:  1222
Name:  ? Phvul.003G121500 Secondary Identifier:  ? PAC:37146861
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G121500 0.5kb upstream 0.5kb upstream 3554 true Chr03: 30650520-30654073 Phaseolus vulgaris
Phvul.003G121500 0.5kb upstream 0.5kb upstream 500 false Chr03: 30650520-30651019 Phaseolus vulgaris
Phvul.003G121500 0.5kb downstream 0.5kb downstream 3554 true Chr03: 30651020-30654573 Phaseolus vulgaris
Phvul.003G121500 0.5kb downstream 0.5kb downstream 500 false Chr03: 30654074-30654573 Phaseolus vulgaris
Phvul.003G121500 1.0kb upstream 1.0kb upstream 4054 true Chr03: 30650020-30654073 Phaseolus vulgaris
Phvul.003G121500 1.0kb upstream 1.0kb upstream 1000 false Chr03: 30650020-30651019 Phaseolus vulgaris
Phvul.003G121500 1.0kb downstream 1.0kb downstream 4054 true Chr03: 30651020-30655073 Phaseolus vulgaris
Phvul.003G121500 1.0kb downstream 1.0kb downstream 1000 false Chr03: 30654074-30655073 Phaseolus vulgaris
Phvul.003G121500 2.0kb upstream 2.0kb upstream 5054 true Chr03: 30649020-30654073 Phaseolus vulgaris
Phvul.003G121500 2.0kb upstream 2.0kb upstream 2000 false Chr03: 30649020-30651019 Phaseolus vulgaris
Phvul.003G121500 2.0kb downstream 2.0kb downstream 5054 true Chr03: 30651020-30656073 Phaseolus vulgaris
Phvul.003G121500 2.0kb downstream 2.0kb downstream 2000 false Chr03: 30654074-30656073 Phaseolus vulgaris
Phvul.003G121500 5.0kb upstream 5.0kb upstream 8054 true Chr03: 30646020-30654073 Phaseolus vulgaris
Phvul.003G121500 5.0kb upstream 5.0kb upstream 5000 false Chr03: 30646020-30651019 Phaseolus vulgaris
Phvul.003G121500 5.0kb downstream 5.0kb downstream 8054 true Chr03: 30651020-30659073 Phaseolus vulgaris
Phvul.003G121500 5.0kb downstream 5.0kb downstream 5000 false Chr03: 30654074-30659073 Phaseolus vulgaris
Phvul.003G121500 10.0kb upstream 10.0kb upstream 13054 true Chr03: 30641020-30654073 Phaseolus vulgaris
Phvul.003G121500 10.0kb upstream 10.0kb upstream 10000 false Chr03: 30641020-30651019 Phaseolus vulgaris
Phvul.003G121500 10.0kb downstream 10.0kb downstream 13054 true Chr03: 30651020-30664073 Phaseolus vulgaris
Phvul.003G121500 10.0kb downstream 10.0kb downstream 10000 false Chr03: 30654074-30664073 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300782 5265 Fabidae View MSA
124063676 5270 Rosid View MSA
123740387 5271 Pentapetalae View MSA
122793647 5272 Eudicot View MSA
122044373 5273 Angiosperm View MSA
121310285 5274 Embryophyte View MSA
123347812 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.45901 0.0 22.4364    
cufflinks 8.31729 0.0 22.1141    
cufflinks 14.3958 0.0 37.3043   High
cufflinks 5.46297 0.0 15.094   Low
cufflinks 9.76875 0.0 25.7479    
cufflinks 11.5199 0.0 30.0578    
cufflinks 6.40627 0.0 17.3409    
cufflinks 6.05577 0.0 16.4813   Low
cufflinks 6.74875 0.0 18.2224    
cufflinks 11.3691 0.0 29.6885    
cufflinks 14.3617 0.0 37.2219   High

0 Strain