Gene : Phvul.003G127100 P. vulgaris v2.1
Defline:  (1 of 1) PTHR15629:SF2 - SH3 DOMAIN-CONTAINING YSC84-LIKE PROTEIN 1 Genomic Order:  1278
Name:  ? Phvul.003G127100 Secondary Identifier:  ? PAC:37148129
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G127100 0.5kb upstream 0.5kb upstream 3851 true Chr03: 31522552-31526402 Phaseolus vulgaris
Phvul.003G127100 0.5kb upstream 0.5kb upstream 500 false Chr03: 31525903-31526402 Phaseolus vulgaris
Phvul.003G127100 0.5kb downstream 0.5kb downstream 3851 true Chr03: 31522052-31525902 Phaseolus vulgaris
Phvul.003G127100 0.5kb downstream 0.5kb downstream 500 false Chr03: 31522052-31522551 Phaseolus vulgaris
Phvul.003G127100 1.0kb upstream 1.0kb upstream 4351 true Chr03: 31522552-31526902 Phaseolus vulgaris
Phvul.003G127100 1.0kb upstream 1.0kb upstream 1000 false Chr03: 31525903-31526902 Phaseolus vulgaris
Phvul.003G127100 1.0kb downstream 1.0kb downstream 4351 true Chr03: 31521552-31525902 Phaseolus vulgaris
Phvul.003G127100 1.0kb downstream 1.0kb downstream 1000 false Chr03: 31521552-31522551 Phaseolus vulgaris
Phvul.003G127100 2.0kb upstream 2.0kb upstream 5351 true Chr03: 31522552-31527902 Phaseolus vulgaris
Phvul.003G127100 2.0kb upstream 2.0kb upstream 2000 false Chr03: 31525903-31527902 Phaseolus vulgaris
Phvul.003G127100 2.0kb downstream 2.0kb downstream 5351 true Chr03: 31520552-31525902 Phaseolus vulgaris
Phvul.003G127100 2.0kb downstream 2.0kb downstream 2000 false Chr03: 31520552-31522551 Phaseolus vulgaris
Phvul.003G127100 5.0kb upstream 5.0kb upstream 8351 true Chr03: 31522552-31530902 Phaseolus vulgaris
Phvul.003G127100 5.0kb upstream 5.0kb upstream 5000 false Chr03: 31525903-31530902 Phaseolus vulgaris
Phvul.003G127100 5.0kb downstream 5.0kb downstream 8351 true Chr03: 31517552-31525902 Phaseolus vulgaris
Phvul.003G127100 5.0kb downstream 5.0kb downstream 5000 false Chr03: 31517552-31522551 Phaseolus vulgaris
Phvul.003G127100 10.0kb upstream 10.0kb upstream 13351 true Chr03: 31522552-31535902 Phaseolus vulgaris
Phvul.003G127100 10.0kb upstream 10.0kb upstream 10000 false Chr03: 31525903-31535902 Phaseolus vulgaris
Phvul.003G127100 10.0kb downstream 10.0kb downstream 13351 true Chr03: 31512552-31525902 Phaseolus vulgaris
Phvul.003G127100 10.0kb downstream 10.0kb downstream 10000 false Chr03: 31512552-31522551 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311551 5265 Fabidae View MSA
124061750 5270 Rosid View MSA
123737814 5271 Pentapetalae View MSA
122792588 5272 Eudicot View MSA
122046278 5273 Angiosperm View MSA
121345874 5274 Embryophyte View MSA
123426176 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 54.3021 0.0 144.578 High High
cufflinks 20.4768 0.0 53.0326    
cufflinks 12.9592 0.0 34.1587    
cufflinks 15.0549 0.0 39.5172    
cufflinks 20.4383 0.0 52.9083    
cufflinks 11.1175 0.0 29.6357   Low
cufflinks 15.0884 0.0 39.4663    
cufflinks 10.2729 0.0 27.5223   Low
cufflinks 16.9748 0.0 44.2404    
cufflinks 32.9835 0.0 85.542   High
cufflinks 18.1485 0.0 47.1541    

0 Strain