Gene : Phvul.003G131600 P. vulgaris v2.1
Defline:  (1 of 2) PTHR22893:SF67 - 12-OXOPHYTODIENOATE REDUCTASE 3 Genomic Order:  1322
Name:  ? Phvul.003G131600 Secondary Identifier:  ? PAC:37144856
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-735 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G131600 0.5kb upstream 0.5kb upstream 4209 true Chr03: 32741829-32746037 Phaseolus vulgaris
Phvul.003G131600 0.5kb upstream 0.5kb upstream 500 false Chr03: 32745538-32746037 Phaseolus vulgaris
Phvul.003G131600 0.5kb downstream 0.5kb downstream 4209 true Chr03: 32741329-32745537 Phaseolus vulgaris
Phvul.003G131600 0.5kb downstream 0.5kb downstream 500 false Chr03: 32741329-32741828 Phaseolus vulgaris
Phvul.003G131600 1.0kb upstream 1.0kb upstream 4709 true Chr03: 32741829-32746537 Phaseolus vulgaris
Phvul.003G131600 1.0kb upstream 1.0kb upstream 1000 false Chr03: 32745538-32746537 Phaseolus vulgaris
Phvul.003G131600 1.0kb downstream 1.0kb downstream 4709 true Chr03: 32740829-32745537 Phaseolus vulgaris
Phvul.003G131600 1.0kb downstream 1.0kb downstream 1000 false Chr03: 32740829-32741828 Phaseolus vulgaris
Phvul.003G131600 2.0kb upstream 2.0kb upstream 5709 true Chr03: 32741829-32747537 Phaseolus vulgaris
Phvul.003G131600 2.0kb upstream 2.0kb upstream 2000 false Chr03: 32745538-32747537 Phaseolus vulgaris
Phvul.003G131600 2.0kb downstream 2.0kb downstream 5709 true Chr03: 32739829-32745537 Phaseolus vulgaris
Phvul.003G131600 2.0kb downstream 2.0kb downstream 2000 false Chr03: 32739829-32741828 Phaseolus vulgaris
Phvul.003G131600 5.0kb upstream 5.0kb upstream 8709 true Chr03: 32741829-32750537 Phaseolus vulgaris
Phvul.003G131600 5.0kb upstream 5.0kb upstream 5000 false Chr03: 32745538-32750537 Phaseolus vulgaris
Phvul.003G131600 5.0kb downstream 5.0kb downstream 8709 true Chr03: 32736829-32745537 Phaseolus vulgaris
Phvul.003G131600 5.0kb downstream 5.0kb downstream 5000 false Chr03: 32736829-32741828 Phaseolus vulgaris
Phvul.003G131600 10.0kb upstream 10.0kb upstream 13709 true Chr03: 32741829-32755537 Phaseolus vulgaris
Phvul.003G131600 10.0kb upstream 10.0kb upstream 10000 false Chr03: 32745538-32755537 Phaseolus vulgaris
Phvul.003G131600 10.0kb downstream 10.0kb downstream 13709 true Chr03: 32731829-32745537 Phaseolus vulgaris
Phvul.003G131600 10.0kb downstream 10.0kb downstream 10000 false Chr03: 32731829-32741828 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305321 5265 Fabidae View MSA
124067438 5270 Rosid View MSA
123752843 5271 Pentapetalae View MSA
122793200 5272 Eudicot View MSA
122045758 5273 Angiosperm View MSA
121351640 5274 Embryophyte View MSA
123428487 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.3419 0.0 37.7914    
cufflinks 21.5247 0.0 55.758    
cufflinks 17.5475 0.0 45.7387    
cufflinks 26.6865 0.0 68.9807    
cufflinks 31.821 0.0 82.3117    
cufflinks 18.3119 0.0 47.6459    
cufflinks 13.9647 0.0 36.778    
cufflinks 5.46526 0.0 15.5368   Low
cufflinks 15.7265 0.0 41.1612    
cufflinks 34.983 0.0 90.689   High
cufflinks 36.359 0.0 94.3034 High High

0 Strain