Gene : Phvul.003G122900 P. vulgaris v2.1
Defline:  (1 of 2) PTHR31342:SF12 - F11A17.16 Genomic Order:  1235
Name:  ? Phvul.003G122900 Secondary Identifier:  ? PAC:37144843
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G122900 0.5kb upstream 0.5kb upstream 8413 true Chr03: 30823059-30831471 Phaseolus vulgaris
Phvul.003G122900 0.5kb upstream 0.5kb upstream 500 false Chr03: 30823059-30823558 Phaseolus vulgaris
Phvul.003G122900 0.5kb downstream 0.5kb downstream 8413 true Chr03: 30823559-30831971 Phaseolus vulgaris
Phvul.003G122900 0.5kb downstream 0.5kb downstream 500 false Chr03: 30831472-30831971 Phaseolus vulgaris
Phvul.003G122900 1.0kb upstream 1.0kb upstream 8913 true Chr03: 30822559-30831471 Phaseolus vulgaris
Phvul.003G122900 1.0kb upstream 1.0kb upstream 1000 false Chr03: 30822559-30823558 Phaseolus vulgaris
Phvul.003G122900 1.0kb downstream 1.0kb downstream 8913 true Chr03: 30823559-30832471 Phaseolus vulgaris
Phvul.003G122900 1.0kb downstream 1.0kb downstream 1000 false Chr03: 30831472-30832471 Phaseolus vulgaris
Phvul.003G122900 2.0kb upstream 2.0kb upstream 9913 true Chr03: 30821559-30831471 Phaseolus vulgaris
Phvul.003G122900 2.0kb upstream 2.0kb upstream 2000 false Chr03: 30821559-30823558 Phaseolus vulgaris
Phvul.003G122900 2.0kb downstream 2.0kb downstream 9913 true Chr03: 30823559-30833471 Phaseolus vulgaris
Phvul.003G122900 2.0kb downstream 2.0kb downstream 2000 false Chr03: 30831472-30833471 Phaseolus vulgaris
Phvul.003G122900 5.0kb upstream 5.0kb upstream 12913 true Chr03: 30818559-30831471 Phaseolus vulgaris
Phvul.003G122900 5.0kb upstream 5.0kb upstream 5000 false Chr03: 30818559-30823558 Phaseolus vulgaris
Phvul.003G122900 5.0kb downstream 5.0kb downstream 12913 true Chr03: 30823559-30836471 Phaseolus vulgaris
Phvul.003G122900 5.0kb downstream 5.0kb downstream 5000 false Chr03: 30831472-30836471 Phaseolus vulgaris
Phvul.003G122900 10.0kb upstream 10.0kb upstream 17913 true Chr03: 30813559-30831471 Phaseolus vulgaris
Phvul.003G122900 10.0kb upstream 10.0kb upstream 10000 false Chr03: 30813559-30823558 Phaseolus vulgaris
Phvul.003G122900 10.0kb downstream 10.0kb downstream 17913 true Chr03: 30823559-30841471 Phaseolus vulgaris
Phvul.003G122900 10.0kb downstream 10.0kb downstream 10000 false Chr03: 30831472-30841471 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310858 5265 Fabidae View MSA
124068159 5270 Rosid View MSA
123646677 5271 Pentapetalae View MSA
122790605 5272 Eudicot View MSA
122043379 5273 Angiosperm View MSA
121310114 5274 Embryophyte View MSA
123427495 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.2356 0.0 34.7928    
cufflinks 6.11475 0.0 22.4807    
cufflinks 7.39261 0.0 22.3522    
cufflinks 0.780344 0.0 3.23563   Low
cufflinks 3.79338 0.0 13.1594    
cufflinks 5.3543 0.0 20.081    
cufflinks 13.0479 0.0 41.8    
cufflinks 11.5464 0.0 37.4129    
cufflinks 9.89783 0.0 32.6244    
cufflinks 4.14382 0.0 17.0801    
cufflinks 9.96092 0.0 30.1636    

0 Strain