Gene : Phvul.003G111500 P. vulgaris v2.1
Defline:  (1 of 3) K10525 - allene oxide cyclase (AOC) Genomic Order:  286
Name:  ? Phvul.003G111500 Secondary Identifier:  ? PAC:37144852
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-735 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G111500 0.5kb upstream 0.5kb upstream 1751 true Chr03: 2731583-2733333 Phaseolus vulgaris
Phvul.003G111500 0.5kb upstream 0.5kb upstream 500 false Chr03: 2731583-2732082 Phaseolus vulgaris
Phvul.003G111500 0.5kb downstream 0.5kb downstream 1751 true Chr03: 2732083-2733833 Phaseolus vulgaris
Phvul.003G111500 0.5kb downstream 0.5kb downstream 500 false Chr03: 2733334-2733833 Phaseolus vulgaris
Phvul.003G111500 1.0kb upstream 1.0kb upstream 2251 true Chr03: 2731083-2733333 Phaseolus vulgaris
Phvul.003G111500 1.0kb upstream 1.0kb upstream 1000 false Chr03: 2731083-2732082 Phaseolus vulgaris
Phvul.003G111500 1.0kb downstream 1.0kb downstream 2251 true Chr03: 2732083-2734333 Phaseolus vulgaris
Phvul.003G111500 1.0kb downstream 1.0kb downstream 1000 false Chr03: 2733334-2734333 Phaseolus vulgaris
Phvul.003G111500 2.0kb upstream 2.0kb upstream 3251 true Chr03: 2730083-2733333 Phaseolus vulgaris
Phvul.003G111500 2.0kb upstream 2.0kb upstream 2000 false Chr03: 2730083-2732082 Phaseolus vulgaris
Phvul.003G111500 2.0kb downstream 2.0kb downstream 3251 true Chr03: 2732083-2735333 Phaseolus vulgaris
Phvul.003G111500 2.0kb downstream 2.0kb downstream 2000 false Chr03: 2733334-2735333 Phaseolus vulgaris
Phvul.003G111500 5.0kb upstream 5.0kb upstream 6251 true Chr03: 2727083-2733333 Phaseolus vulgaris
Phvul.003G111500 5.0kb upstream 5.0kb upstream 5000 false Chr03: 2727083-2732082 Phaseolus vulgaris
Phvul.003G111500 5.0kb downstream 5.0kb downstream 6251 true Chr03: 2732083-2738333 Phaseolus vulgaris
Phvul.003G111500 5.0kb downstream 5.0kb downstream 5000 false Chr03: 2733334-2738333 Phaseolus vulgaris
Phvul.003G111500 10.0kb upstream 10.0kb upstream 11251 true Chr03: 2722083-2733333 Phaseolus vulgaris
Phvul.003G111500 10.0kb upstream 10.0kb upstream 10000 false Chr03: 2722083-2732082 Phaseolus vulgaris
Phvul.003G111500 10.0kb downstream 10.0kb downstream 11251 true Chr03: 2732083-2743333 Phaseolus vulgaris
Phvul.003G111500 10.0kb downstream 10.0kb downstream 10000 false Chr03: 2733334-2743333 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305764 5265 Fabidae View MSA
124066771 5270 Rosid View MSA
123739753 5271 Pentapetalae View MSA
122789032 5272 Eudicot View MSA
122045897 5273 Angiosperm View MSA
121350459 5274 Embryophyte View MSA
123426138 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.9605 0.0 23.4551    
cufflinks 21.5375 0.0 57.7216    
cufflinks 1.5025 0.0 5.30528   Low
cufflinks 33.0175 0.0 86.1631   High
cufflinks 3.17057 0.0 10.4509   Low
cufflinks 4.83339 0.0 15.0491    
cufflinks 20.5489 0.0 55.3586    
cufflinks 24.172 0.0 64.1627    
cufflinks 35.6196 0.0 92.733 High High
cufflinks 16.3267 0.0 44.8581    
cufflinks 4.56705 0.0 14.4282    

0 Strain