Gene : Phvul.003G114400 P. vulgaris v2.1
Defline:  (1 of 2) PTHR23257:SF485 - PAS DOMAIN-CONTAINING PROTEIN TYROSINE KINASE Genomic Order:  1150
Name:  ? Phvul.003G114400 Secondary Identifier:  ? PAC:37147489
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G114400 0.5kb upstream 0.5kb upstream 7973 true Chr03: 29146405-29154377 Phaseolus vulgaris
Phvul.003G114400 0.5kb upstream 0.5kb upstream 500 false Chr03: 29146405-29146904 Phaseolus vulgaris
Phvul.003G114400 0.5kb downstream 0.5kb downstream 7973 true Chr03: 29146905-29154877 Phaseolus vulgaris
Phvul.003G114400 0.5kb downstream 0.5kb downstream 500 false Chr03: 29154378-29154877 Phaseolus vulgaris
Phvul.003G114400 1.0kb upstream 1.0kb upstream 8473 true Chr03: 29145905-29154377 Phaseolus vulgaris
Phvul.003G114400 1.0kb upstream 1.0kb upstream 1000 false Chr03: 29145905-29146904 Phaseolus vulgaris
Phvul.003G114400 1.0kb downstream 1.0kb downstream 8473 true Chr03: 29146905-29155377 Phaseolus vulgaris
Phvul.003G114400 1.0kb downstream 1.0kb downstream 1000 false Chr03: 29154378-29155377 Phaseolus vulgaris
Phvul.003G114400 2.0kb upstream 2.0kb upstream 9473 true Chr03: 29144905-29154377 Phaseolus vulgaris
Phvul.003G114400 2.0kb upstream 2.0kb upstream 2000 false Chr03: 29144905-29146904 Phaseolus vulgaris
Phvul.003G114400 2.0kb downstream 2.0kb downstream 9473 true Chr03: 29146905-29156377 Phaseolus vulgaris
Phvul.003G114400 2.0kb downstream 2.0kb downstream 2000 false Chr03: 29154378-29156377 Phaseolus vulgaris
Phvul.003G114400 5.0kb upstream 5.0kb upstream 12473 true Chr03: 29141905-29154377 Phaseolus vulgaris
Phvul.003G114400 5.0kb upstream 5.0kb upstream 5000 false Chr03: 29141905-29146904 Phaseolus vulgaris
Phvul.003G114400 5.0kb downstream 5.0kb downstream 12473 true Chr03: 29146905-29159377 Phaseolus vulgaris
Phvul.003G114400 5.0kb downstream 5.0kb downstream 5000 false Chr03: 29154378-29159377 Phaseolus vulgaris
Phvul.003G114400 10.0kb upstream 10.0kb upstream 17473 true Chr03: 29136905-29154377 Phaseolus vulgaris
Phvul.003G114400 10.0kb upstream 10.0kb upstream 10000 false Chr03: 29136905-29146904 Phaseolus vulgaris
Phvul.003G114400 10.0kb downstream 10.0kb downstream 17473 true Chr03: 29146905-29164377 Phaseolus vulgaris
Phvul.003G114400 10.0kb downstream 10.0kb downstream 10000 false Chr03: 29154378-29164377 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311561 5265 Fabidae View MSA
124062417 5270 Rosid View MSA
123745190 5271 Pentapetalae View MSA
122793223 5272 Eudicot View MSA
122045433 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121310448 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.13332 0.0 11.1559   Low
cufflinks 6.24857 0.0 16.409    
cufflinks 16.9523 0.0 44.1567   High
cufflinks 4.47105 0.0 12.0909   Low
cufflinks 8.93991 0.0 23.1811    
cufflinks 15.4841 0.0 40.2296   High
cufflinks 10.6456 0.0 27.5169    
cufflinks 7.9223 0.0 20.5558    
cufflinks 13.6441 0.0 35.3379    
cufflinks 10.8941 0.0 28.1604    
cufflinks 8.21585 0.0 21.3346    

0 Strain