Gene : Phvul.003G114300 P. vulgaris v2.1
Defline:  (1 of 2) PTHR23118//PTHR23118:SF3 - ATP-CITRATE SYNTHASE // SUBFAMILY NOT NAMED Genomic Order:  1149
Name:  ? Phvul.003G114300 Secondary Identifier:  ? PAC:37147374
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-5172 Phaseolus vulgaris pathologic  
Pvulgaris PWY-5173 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G114300 0.5kb upstream 0.5kb upstream 6097 true Chr03: 29138999-29145095 Phaseolus vulgaris
Phvul.003G114300 0.5kb upstream 0.5kb upstream 500 false Chr03: 29138999-29139498 Phaseolus vulgaris
Phvul.003G114300 0.5kb downstream 0.5kb downstream 6097 true Chr03: 29139499-29145595 Phaseolus vulgaris
Phvul.003G114300 0.5kb downstream 0.5kb downstream 500 false Chr03: 29145096-29145595 Phaseolus vulgaris
Phvul.003G114300 1.0kb upstream 1.0kb upstream 6597 true Chr03: 29138499-29145095 Phaseolus vulgaris
Phvul.003G114300 1.0kb upstream 1.0kb upstream 1000 false Chr03: 29138499-29139498 Phaseolus vulgaris
Phvul.003G114300 1.0kb downstream 1.0kb downstream 6597 true Chr03: 29139499-29146095 Phaseolus vulgaris
Phvul.003G114300 1.0kb downstream 1.0kb downstream 1000 false Chr03: 29145096-29146095 Phaseolus vulgaris
Phvul.003G114300 2.0kb upstream 2.0kb upstream 7597 true Chr03: 29137499-29145095 Phaseolus vulgaris
Phvul.003G114300 2.0kb upstream 2.0kb upstream 2000 false Chr03: 29137499-29139498 Phaseolus vulgaris
Phvul.003G114300 2.0kb downstream 2.0kb downstream 7597 true Chr03: 29139499-29147095 Phaseolus vulgaris
Phvul.003G114300 2.0kb downstream 2.0kb downstream 2000 false Chr03: 29145096-29147095 Phaseolus vulgaris
Phvul.003G114300 5.0kb upstream 5.0kb upstream 10597 true Chr03: 29134499-29145095 Phaseolus vulgaris
Phvul.003G114300 5.0kb upstream 5.0kb upstream 5000 false Chr03: 29134499-29139498 Phaseolus vulgaris
Phvul.003G114300 5.0kb downstream 5.0kb downstream 10597 true Chr03: 29139499-29150095 Phaseolus vulgaris
Phvul.003G114300 5.0kb downstream 5.0kb downstream 5000 false Chr03: 29145096-29150095 Phaseolus vulgaris
Phvul.003G114300 10.0kb upstream 10.0kb upstream 15597 true Chr03: 29129499-29145095 Phaseolus vulgaris
Phvul.003G114300 10.0kb upstream 10.0kb upstream 10000 false Chr03: 29129499-29139498 Phaseolus vulgaris
Phvul.003G114300 10.0kb downstream 10.0kb downstream 15597 true Chr03: 29139499-29155095 Phaseolus vulgaris
Phvul.003G114300 10.0kb downstream 10.0kb downstream 10000 false Chr03: 29145096-29155095 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312569 5265 Fabidae View MSA
124062088 5270 Rosid View MSA
123736971 5271 Pentapetalae View MSA
122787632 5272 Eudicot View MSA
122045238 5273 Angiosperm View MSA
121345896 5274 Embryophyte View MSA
123427786 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.04864 0.0 20.9573   Low
cufflinks 29.0525 0.0 111.114   High
cufflinks 19.6123 0.0 61.7322    
cufflinks 15.3583 0.0 58.3457    
cufflinks 19.2313 0.0 72.6891    
cufflinks 27.772 0.0 106.863   High
cufflinks 7.76286 0.0 26.633    
cufflinks 5.20824 0.0 19.1729   Low
cufflinks 9.45344 0.0 34.8106    
cufflinks 9.35507 0.0 34.6057    
cufflinks 21.6302 0.0 81.3579    

0 Strain