Gene : Phvul.003G231000 P. vulgaris v2.1
Defline:  (1 of 13) PTHR23042//PTHR23042:SF57 - CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS // SUBFAMILY NOT NAMED Genomic Order:  2344
Name:  ? Phvul.003G231000 Secondary Identifier:  ? PAC:37146247
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G231000 0.5kb upstream 0.5kb upstream 2882 true Chr03: 46326911-46329792 Phaseolus vulgaris
Phvul.003G231000 0.5kb upstream 0.5kb upstream 500 false Chr03: 46326911-46327410 Phaseolus vulgaris
Phvul.003G231000 0.5kb downstream 0.5kb downstream 2882 true Chr03: 46327411-46330292 Phaseolus vulgaris
Phvul.003G231000 0.5kb downstream 0.5kb downstream 500 false Chr03: 46329793-46330292 Phaseolus vulgaris
Phvul.003G231000 1.0kb upstream 1.0kb upstream 3382 true Chr03: 46326411-46329792 Phaseolus vulgaris
Phvul.003G231000 1.0kb upstream 1.0kb upstream 1000 false Chr03: 46326411-46327410 Phaseolus vulgaris
Phvul.003G231000 1.0kb downstream 1.0kb downstream 3382 true Chr03: 46327411-46330792 Phaseolus vulgaris
Phvul.003G231000 1.0kb downstream 1.0kb downstream 1000 false Chr03: 46329793-46330792 Phaseolus vulgaris
Phvul.003G231000 2.0kb upstream 2.0kb upstream 4382 true Chr03: 46325411-46329792 Phaseolus vulgaris
Phvul.003G231000 2.0kb upstream 2.0kb upstream 2000 false Chr03: 46325411-46327410 Phaseolus vulgaris
Phvul.003G231000 2.0kb downstream 2.0kb downstream 4382 true Chr03: 46327411-46331792 Phaseolus vulgaris
Phvul.003G231000 2.0kb downstream 2.0kb downstream 2000 false Chr03: 46329793-46331792 Phaseolus vulgaris
Phvul.003G231000 5.0kb upstream 5.0kb upstream 7382 true Chr03: 46322411-46329792 Phaseolus vulgaris
Phvul.003G231000 5.0kb upstream 5.0kb upstream 5000 false Chr03: 46322411-46327410 Phaseolus vulgaris
Phvul.003G231000 5.0kb downstream 5.0kb downstream 7382 true Chr03: 46327411-46334792 Phaseolus vulgaris
Phvul.003G231000 5.0kb downstream 5.0kb downstream 5000 false Chr03: 46329793-46334792 Phaseolus vulgaris
Phvul.003G231000 10.0kb upstream 10.0kb upstream 12382 true Chr03: 46317411-46329792 Phaseolus vulgaris
Phvul.003G231000 10.0kb upstream 10.0kb upstream 10000 false Chr03: 46317411-46327410 Phaseolus vulgaris
Phvul.003G231000 10.0kb downstream 10.0kb downstream 12382 true Chr03: 46327411-46339792 Phaseolus vulgaris
Phvul.003G231000 10.0kb downstream 10.0kb downstream 10000 false Chr03: 46329793-46339792 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313043 5265 Fabidae View MSA
124070459 5270 Rosid View MSA
123749435 5271 Pentapetalae View MSA
122795103 5272 Eudicot View MSA
122042005 5273 Angiosperm View MSA
121351451 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.91937 0.0 6.19644   Low
cufflinks 8.46942 0.0 23.3458    
cufflinks 1.91387 0.0 6.17336   Low
cufflinks 3.52708 0.0 10.643    
cufflinks 8.35348 0.0 23.1471    
cufflinks 1.09119 0.0 3.75778   Low
cufflinks 19.5209 0.0 50.7332   High
cufflinks 15.6289 0.0 41.0047   High
cufflinks 20.3402 0.0 52.8008   High
cufflinks 3.81801 0.0 11.4282    
cufflinks 4.88746 0.0 14.2603    

0 Strain