Gene : Phvul.003G172800 P. vulgaris v2.1
Defline:  (1 of 3) PTHR12294 - EF HAND DOMAIN FAMILY A1,A2-RELATED Genomic Order:  1752
Name:  ? Phvul.003G172800 Secondary Identifier:  ? PAC:37146785
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G172800 0.5kb upstream 0.5kb upstream 4331 true Chr03: 39494974-39499304 Phaseolus vulgaris
Phvul.003G172800 0.5kb upstream 0.5kb upstream 500 false Chr03: 39498805-39499304 Phaseolus vulgaris
Phvul.003G172800 0.5kb downstream 0.5kb downstream 4331 true Chr03: 39494474-39498804 Phaseolus vulgaris
Phvul.003G172800 0.5kb downstream 0.5kb downstream 500 false Chr03: 39494474-39494973 Phaseolus vulgaris
Phvul.003G172800 1.0kb upstream 1.0kb upstream 4831 true Chr03: 39494974-39499804 Phaseolus vulgaris
Phvul.003G172800 1.0kb upstream 1.0kb upstream 1000 false Chr03: 39498805-39499804 Phaseolus vulgaris
Phvul.003G172800 1.0kb downstream 1.0kb downstream 4831 true Chr03: 39493974-39498804 Phaseolus vulgaris
Phvul.003G172800 1.0kb downstream 1.0kb downstream 1000 false Chr03: 39493974-39494973 Phaseolus vulgaris
Phvul.003G172800 2.0kb upstream 2.0kb upstream 5831 true Chr03: 39494974-39500804 Phaseolus vulgaris
Phvul.003G172800 2.0kb upstream 2.0kb upstream 2000 false Chr03: 39498805-39500804 Phaseolus vulgaris
Phvul.003G172800 2.0kb downstream 2.0kb downstream 5831 true Chr03: 39492974-39498804 Phaseolus vulgaris
Phvul.003G172800 2.0kb downstream 2.0kb downstream 2000 false Chr03: 39492974-39494973 Phaseolus vulgaris
Phvul.003G172800 5.0kb upstream 5.0kb upstream 8831 true Chr03: 39494974-39503804 Phaseolus vulgaris
Phvul.003G172800 5.0kb upstream 5.0kb upstream 5000 false Chr03: 39498805-39503804 Phaseolus vulgaris
Phvul.003G172800 5.0kb downstream 5.0kb downstream 8831 true Chr03: 39489974-39498804 Phaseolus vulgaris
Phvul.003G172800 5.0kb downstream 5.0kb downstream 5000 false Chr03: 39489974-39494973 Phaseolus vulgaris
Phvul.003G172800 10.0kb upstream 10.0kb upstream 13831 true Chr03: 39494974-39508804 Phaseolus vulgaris
Phvul.003G172800 10.0kb upstream 10.0kb upstream 10000 false Chr03: 39498805-39508804 Phaseolus vulgaris
Phvul.003G172800 10.0kb downstream 10.0kb downstream 13831 true Chr03: 39484974-39498804 Phaseolus vulgaris
Phvul.003G172800 10.0kb downstream 10.0kb downstream 10000 false Chr03: 39484974-39494973 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302172 5265 Fabidae View MSA
124073183 5270 Rosid View MSA
123742641 5271 Pentapetalae View MSA
122790177 5272 Eudicot View MSA
122041646 5273 Angiosperm View MSA
121347886 5274 Embryophyte View MSA
123424828 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.688476 0.0 4.36734    
cufflinks 0.893752 0.0 6.77534    
cufflinks 0.190879 0.0 0.788105 Low Low
cufflinks 1.63895 0.0 8.85053    
cufflinks 1.71216 0.0 8.97326    
cufflinks 0.553452 0.0 4.43925    
cufflinks 1.56873 0.0 9.87611    
cufflinks 2.21918 0.0 13.1983    
cufflinks 0.233124 0.0 1.93625 Low Low
cufflinks 4.29317 0.0 20.1338   High
cufflinks 1.76586 0.0 10.289    

0 Strain