Gene : Phvul.003G173300 P. vulgaris v2.1
Defline:  (1 of 2) PTHR31065:SF11 - PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN Genomic Order:  1757
Name:  ? Phvul.003G173300 Secondary Identifier:  ? PAC:37146398
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G173300 0.5kb upstream 0.5kb upstream 2657 true Chr03: 39542141-39544797 Phaseolus vulgaris
Phvul.003G173300 0.5kb upstream 0.5kb upstream 500 false Chr03: 39544298-39544797 Phaseolus vulgaris
Phvul.003G173300 0.5kb downstream 0.5kb downstream 2657 true Chr03: 39541641-39544297 Phaseolus vulgaris
Phvul.003G173300 0.5kb downstream 0.5kb downstream 500 false Chr03: 39541641-39542140 Phaseolus vulgaris
Phvul.003G173300 1.0kb upstream 1.0kb upstream 3157 true Chr03: 39542141-39545297 Phaseolus vulgaris
Phvul.003G173300 1.0kb upstream 1.0kb upstream 1000 false Chr03: 39544298-39545297 Phaseolus vulgaris
Phvul.003G173300 1.0kb downstream 1.0kb downstream 3157 true Chr03: 39541141-39544297 Phaseolus vulgaris
Phvul.003G173300 1.0kb downstream 1.0kb downstream 1000 false Chr03: 39541141-39542140 Phaseolus vulgaris
Phvul.003G173300 2.0kb upstream 2.0kb upstream 4157 true Chr03: 39542141-39546297 Phaseolus vulgaris
Phvul.003G173300 2.0kb upstream 2.0kb upstream 2000 false Chr03: 39544298-39546297 Phaseolus vulgaris
Phvul.003G173300 2.0kb downstream 2.0kb downstream 4157 true Chr03: 39540141-39544297 Phaseolus vulgaris
Phvul.003G173300 2.0kb downstream 2.0kb downstream 2000 false Chr03: 39540141-39542140 Phaseolus vulgaris
Phvul.003G173300 5.0kb upstream 5.0kb upstream 7157 true Chr03: 39542141-39549297 Phaseolus vulgaris
Phvul.003G173300 5.0kb upstream 5.0kb upstream 5000 false Chr03: 39544298-39549297 Phaseolus vulgaris
Phvul.003G173300 5.0kb downstream 5.0kb downstream 7157 true Chr03: 39537141-39544297 Phaseolus vulgaris
Phvul.003G173300 5.0kb downstream 5.0kb downstream 5000 false Chr03: 39537141-39542140 Phaseolus vulgaris
Phvul.003G173300 10.0kb upstream 10.0kb upstream 12157 true Chr03: 39542141-39554297 Phaseolus vulgaris
Phvul.003G173300 10.0kb upstream 10.0kb upstream 10000 false Chr03: 39544298-39554297 Phaseolus vulgaris
Phvul.003G173300 10.0kb downstream 10.0kb downstream 12157 true Chr03: 39532141-39544297 Phaseolus vulgaris
Phvul.003G173300 10.0kb downstream 10.0kb downstream 10000 false Chr03: 39532141-39542140 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312691 5265 Fabidae View MSA
124068522 5270 Rosid View MSA
123747069 5271 Pentapetalae View MSA
122791391 5272 Eudicot View MSA
122044768 5273 Angiosperm View MSA
121349888 5274 Embryophyte View MSA
123428703 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.463874 0.0 1.75624    
cufflinks 0.650522 0.0 2.39113    
cufflinks 0.0403446 0.0 0.188438 Low Low
cufflinks 0.515199 0.0 1.94145 Low  
cufflinks 1.0429 0.0 3.70132    
cufflinks 0.0916002 0.0 0.395248 Low Low
cufflinks 3.12296 0.0 9.68055   High
cufflinks 5.36573 0.0 15.5716   High
cufflinks 3.17582 0.0 9.84694   High
cufflinks 0.115377 0.0 0.489139 Low Low
cufflinks 0.627316 0.0 2.3234    

0 Strain