Gene : Phvul.003G230100 P. vulgaris v2.1
Defline:  (1 of 2) PTHR31747:SF1 - PROTEIN LOL1 Genomic Order:  2335
Name:  ? Phvul.003G230100 Secondary Identifier:  ? PAC:37145680
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G230100 0.5kb upstream 0.5kb upstream 2758 true Chr03: 46181039-46183796 Phaseolus vulgaris
Phvul.003G230100 0.5kb upstream 0.5kb upstream 500 false Chr03: 46181039-46181538 Phaseolus vulgaris
Phvul.003G230100 0.5kb downstream 0.5kb downstream 2758 true Chr03: 46181539-46184296 Phaseolus vulgaris
Phvul.003G230100 0.5kb downstream 0.5kb downstream 500 false Chr03: 46183797-46184296 Phaseolus vulgaris
Phvul.003G230100 1.0kb upstream 1.0kb upstream 3258 true Chr03: 46180539-46183796 Phaseolus vulgaris
Phvul.003G230100 1.0kb upstream 1.0kb upstream 1000 false Chr03: 46180539-46181538 Phaseolus vulgaris
Phvul.003G230100 1.0kb downstream 1.0kb downstream 3258 true Chr03: 46181539-46184796 Phaseolus vulgaris
Phvul.003G230100 1.0kb downstream 1.0kb downstream 1000 false Chr03: 46183797-46184796 Phaseolus vulgaris
Phvul.003G230100 2.0kb upstream 2.0kb upstream 4258 true Chr03: 46179539-46183796 Phaseolus vulgaris
Phvul.003G230100 2.0kb upstream 2.0kb upstream 2000 false Chr03: 46179539-46181538 Phaseolus vulgaris
Phvul.003G230100 2.0kb downstream 2.0kb downstream 4258 true Chr03: 46181539-46185796 Phaseolus vulgaris
Phvul.003G230100 2.0kb downstream 2.0kb downstream 2000 false Chr03: 46183797-46185796 Phaseolus vulgaris
Phvul.003G230100 5.0kb upstream 5.0kb upstream 7258 true Chr03: 46176539-46183796 Phaseolus vulgaris
Phvul.003G230100 5.0kb upstream 5.0kb upstream 5000 false Chr03: 46176539-46181538 Phaseolus vulgaris
Phvul.003G230100 5.0kb downstream 5.0kb downstream 7258 true Chr03: 46181539-46188796 Phaseolus vulgaris
Phvul.003G230100 5.0kb downstream 5.0kb downstream 5000 false Chr03: 46183797-46188796 Phaseolus vulgaris
Phvul.003G230100 10.0kb upstream 10.0kb upstream 12258 true Chr03: 46171539-46183796 Phaseolus vulgaris
Phvul.003G230100 10.0kb upstream 10.0kb upstream 10000 false Chr03: 46171539-46181538 Phaseolus vulgaris
Phvul.003G230100 10.0kb downstream 10.0kb downstream 12258 true Chr03: 46181539-46193796 Phaseolus vulgaris
Phvul.003G230100 10.0kb downstream 10.0kb downstream 10000 false Chr03: 46183797-46193796 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310386 5265 Fabidae View MSA
124064125 5270 Rosid View MSA
123749218 5271 Pentapetalae View MSA
122793241 5272 Eudicot View MSA
122043941 5273 Angiosperm View MSA
121347680 5274 Embryophyte View MSA
123425652 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.34729 0.0 35.5613    
cufflinks 11.3282 0.0 44.0424    
cufflinks 59.7426 0.0 189.7 High High
cufflinks 29.197 0.0 95.9424    
cufflinks 14.2026 0.0 53.1947    
cufflinks 12.3647 0.0 46.9837    
cufflinks 0.119961 0.0 0.528232 Low Low
cufflinks 0.058656 0.0 0.290815 Low Low
cufflinks 0.131162 0.0 0.570104 Low Low
cufflinks 4.90333 0.0 20.5608    
cufflinks 11.4308 0.0 44.6802    

0 Strain