Gene : Phvul.003G176900 P. vulgaris v2.1
Defline:  (1 of 2) PTHR13677:SF0 - PROTEIN F53H1.3, ISOFORM A Genomic Order:  1794
Name:  ? Phvul.003G176900 Secondary Identifier:  ? PAC:37145932
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G176900 0.5kb upstream 0.5kb upstream 4726 true Chr03: 40001929-40006654 Phaseolus vulgaris
Phvul.003G176900 0.5kb upstream 0.5kb upstream 500 false Chr03: 40006155-40006654 Phaseolus vulgaris
Phvul.003G176900 0.5kb downstream 0.5kb downstream 4726 true Chr03: 40001429-40006154 Phaseolus vulgaris
Phvul.003G176900 0.5kb downstream 0.5kb downstream 500 false Chr03: 40001429-40001928 Phaseolus vulgaris
Phvul.003G176900 1.0kb upstream 1.0kb upstream 5226 true Chr03: 40001929-40007154 Phaseolus vulgaris
Phvul.003G176900 1.0kb upstream 1.0kb upstream 1000 false Chr03: 40006155-40007154 Phaseolus vulgaris
Phvul.003G176900 1.0kb downstream 1.0kb downstream 5226 true Chr03: 40000929-40006154 Phaseolus vulgaris
Phvul.003G176900 1.0kb downstream 1.0kb downstream 1000 false Chr03: 40000929-40001928 Phaseolus vulgaris
Phvul.003G176900 2.0kb upstream 2.0kb upstream 6226 true Chr03: 40001929-40008154 Phaseolus vulgaris
Phvul.003G176900 2.0kb upstream 2.0kb upstream 2000 false Chr03: 40006155-40008154 Phaseolus vulgaris
Phvul.003G176900 2.0kb downstream 2.0kb downstream 6226 true Chr03: 39999929-40006154 Phaseolus vulgaris
Phvul.003G176900 2.0kb downstream 2.0kb downstream 2000 false Chr03: 39999929-40001928 Phaseolus vulgaris
Phvul.003G176900 5.0kb upstream 5.0kb upstream 9226 true Chr03: 40001929-40011154 Phaseolus vulgaris
Phvul.003G176900 5.0kb upstream 5.0kb upstream 5000 false Chr03: 40006155-40011154 Phaseolus vulgaris
Phvul.003G176900 5.0kb downstream 5.0kb downstream 9226 true Chr03: 39996929-40006154 Phaseolus vulgaris
Phvul.003G176900 5.0kb downstream 5.0kb downstream 5000 false Chr03: 39996929-40001928 Phaseolus vulgaris
Phvul.003G176900 10.0kb upstream 10.0kb upstream 14226 true Chr03: 40001929-40016154 Phaseolus vulgaris
Phvul.003G176900 10.0kb upstream 10.0kb upstream 10000 false Chr03: 40006155-40016154 Phaseolus vulgaris
Phvul.003G176900 10.0kb downstream 10.0kb downstream 14226 true Chr03: 39991929-40006154 Phaseolus vulgaris
Phvul.003G176900 10.0kb downstream 10.0kb downstream 10000 false Chr03: 39991929-40001928 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310377 5265 Fabidae View MSA
124067041 5270 Rosid View MSA
123739049 5271 Pentapetalae View MSA
122789935 5272 Eudicot View MSA
122046522 5273 Angiosperm View MSA
121346566 5274 Embryophyte View MSA
123427841 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.81286 0.0 17.9765    
cufflinks 2.97204 0.0 16.0069    
cufflinks 6.91974 0.0 30.0025   High
cufflinks 2.27448 0.0 10.8337   Low
cufflinks 5.01276 0.0 21.6698    
cufflinks 4.56665 0.0 17.7833    
cufflinks 4.01721 0.0 13.8727    
cufflinks 2.37063 0.0 10.9599   Low
cufflinks 4.04717 0.0 21.4844    
cufflinks 5.0215 0.0 23.4877    
cufflinks 3.8996 0.0 18.3989    

0 Strain