Gene : Phvul.003G176700 P. vulgaris v2.1

Defline:  (1 of 1) PTHR10625:SF120 - HISTONE DEACETYLASE 15 Genomic Order:  1792
Name:  ? Phvul.003G176700 Secondary Identifier:  ? PAC:37146478

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G176700 0.5kb upstream 0.5kb upstream 9196 true Chr03: 39985634-39994829 Phaseolus vulgaris
Phvul.003G176700 0.5kb upstream 0.5kb upstream 500 false Chr03: 39985634-39986133 Phaseolus vulgaris
Phvul.003G176700 0.5kb downstream 0.5kb downstream 9196 true Chr03: 39986134-39995329 Phaseolus vulgaris
Phvul.003G176700 0.5kb downstream 0.5kb downstream 500 false Chr03: 39994830-39995329 Phaseolus vulgaris
Phvul.003G176700 1.0kb upstream 1.0kb upstream 9696 true Chr03: 39985134-39994829 Phaseolus vulgaris
Phvul.003G176700 1.0kb upstream 1.0kb upstream 1000 false Chr03: 39985134-39986133 Phaseolus vulgaris
Phvul.003G176700 1.0kb downstream 1.0kb downstream 9696 true Chr03: 39986134-39995829 Phaseolus vulgaris
Phvul.003G176700 1.0kb downstream 1.0kb downstream 1000 false Chr03: 39994830-39995829 Phaseolus vulgaris
Phvul.003G176700 2.0kb upstream 2.0kb upstream 10696 true Chr03: 39984134-39994829 Phaseolus vulgaris
Phvul.003G176700 2.0kb upstream 2.0kb upstream 2000 false Chr03: 39984134-39986133 Phaseolus vulgaris
Phvul.003G176700 2.0kb downstream 2.0kb downstream 10696 true Chr03: 39986134-39996829 Phaseolus vulgaris
Phvul.003G176700 2.0kb downstream 2.0kb downstream 2000 false Chr03: 39994830-39996829 Phaseolus vulgaris
Phvul.003G176700 5.0kb upstream 5.0kb upstream 13696 true Chr03: 39981134-39994829 Phaseolus vulgaris
Phvul.003G176700 5.0kb upstream 5.0kb upstream 5000 false Chr03: 39981134-39986133 Phaseolus vulgaris
Phvul.003G176700 5.0kb downstream 5.0kb downstream 13696 true Chr03: 39986134-39999829 Phaseolus vulgaris
Phvul.003G176700 5.0kb downstream 5.0kb downstream 5000 false Chr03: 39994830-39999829 Phaseolus vulgaris
Phvul.003G176700 10.0kb upstream 10.0kb upstream 18696 true Chr03: 39976134-39994829 Phaseolus vulgaris
Phvul.003G176700 10.0kb upstream 10.0kb upstream 10000 false Chr03: 39976134-39986133 Phaseolus vulgaris
Phvul.003G176700 10.0kb downstream 10.0kb downstream 18696 true Chr03: 39986134-40004829 Phaseolus vulgaris
Phvul.003G176700 10.0kb downstream 10.0kb downstream 10000 false Chr03: 39994830-40004829 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303392 5265 Fabidae View MSA
124065591 5270 Rosid View MSA
123741307 5271 Pentapetalae View MSA
122792610 5272 Eudicot View MSA
122044856 5273 Angiosperm View MSA
121349302 5274 Embryophyte View MSA
123428156 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.49087 0.0 12.5151   Low
cufflinks 9.79153 0.0 25.7112    
cufflinks 7.77604 0.0 20.7246    
cufflinks 6.23615 0.0 17.0107    
cufflinks 7.79538 0.0 20.8639    
cufflinks 7.40426 0.0 19.7942    
cufflinks 10.6926 0.0 27.9315    
cufflinks 13.8746 0.0 35.9244   High
cufflinks 8.90719 0.0 23.5454    
cufflinks 8.60485 0.0 22.7957    
cufflinks 6.25766 0.0 17.0216    

0 Strain