Gene : Phvul.003G175800 P. vulgaris v2.1
Defline:  (1 of 1) K02209 - DNA replication licensing factor MCM5 (MCM5, CDC46) Genomic Order:  1783
Name:  ? Phvul.003G175800 Secondary Identifier:  ? PAC:37148372
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G175800 0.5kb upstream 0.5kb upstream 5873 true Chr03: 39814727-39820599 Phaseolus vulgaris
Phvul.003G175800 0.5kb upstream 0.5kb upstream 500 false Chr03: 39814727-39815226 Phaseolus vulgaris
Phvul.003G175800 0.5kb downstream 0.5kb downstream 5873 true Chr03: 39815227-39821099 Phaseolus vulgaris
Phvul.003G175800 0.5kb downstream 0.5kb downstream 500 false Chr03: 39820600-39821099 Phaseolus vulgaris
Phvul.003G175800 1.0kb upstream 1.0kb upstream 6373 true Chr03: 39814227-39820599 Phaseolus vulgaris
Phvul.003G175800 1.0kb upstream 1.0kb upstream 1000 false Chr03: 39814227-39815226 Phaseolus vulgaris
Phvul.003G175800 1.0kb downstream 1.0kb downstream 6373 true Chr03: 39815227-39821599 Phaseolus vulgaris
Phvul.003G175800 1.0kb downstream 1.0kb downstream 1000 false Chr03: 39820600-39821599 Phaseolus vulgaris
Phvul.003G175800 2.0kb upstream 2.0kb upstream 7373 true Chr03: 39813227-39820599 Phaseolus vulgaris
Phvul.003G175800 2.0kb upstream 2.0kb upstream 2000 false Chr03: 39813227-39815226 Phaseolus vulgaris
Phvul.003G175800 2.0kb downstream 2.0kb downstream 7373 true Chr03: 39815227-39822599 Phaseolus vulgaris
Phvul.003G175800 2.0kb downstream 2.0kb downstream 2000 false Chr03: 39820600-39822599 Phaseolus vulgaris
Phvul.003G175800 5.0kb upstream 5.0kb upstream 10373 true Chr03: 39810227-39820599 Phaseolus vulgaris
Phvul.003G175800 5.0kb upstream 5.0kb upstream 5000 false Chr03: 39810227-39815226 Phaseolus vulgaris
Phvul.003G175800 5.0kb downstream 5.0kb downstream 10373 true Chr03: 39815227-39825599 Phaseolus vulgaris
Phvul.003G175800 5.0kb downstream 5.0kb downstream 5000 false Chr03: 39820600-39825599 Phaseolus vulgaris
Phvul.003G175800 10.0kb upstream 10.0kb upstream 15373 true Chr03: 39805227-39820599 Phaseolus vulgaris
Phvul.003G175800 10.0kb upstream 10.0kb upstream 10000 false Chr03: 39805227-39815226 Phaseolus vulgaris
Phvul.003G175800 10.0kb downstream 10.0kb downstream 15373 true Chr03: 39815227-39830599 Phaseolus vulgaris
Phvul.003G175800 10.0kb downstream 10.0kb downstream 10000 false Chr03: 39820600-39830599 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304817 5265 Fabidae View MSA
124068340 5270 Rosid View MSA
123739009 5271 Pentapetalae View MSA
122789464 5272 Eudicot View MSA
122046085 5273 Angiosperm View MSA
123428876 5275 Viridiplantae View MSA
121346646 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.37109 0.0 12.1544    
cufflinks 15.8423 0.0 40.9528   High
cufflinks 3.53323 0.0 10.0142    
cufflinks 5.03946 0.0 13.8681    
cufflinks 7.70545 0.0 20.5102    
cufflinks 11.558 0.0 30.0452    
cufflinks 12.0743 0.0 31.3264    
cufflinks 13.2554 0.0 34.3228    
cufflinks 11.267 0.0 29.3018    
cufflinks 1.16977 0.0 3.75646   Low
cufflinks 8.77775 0.0 23.1405    

0 Strain