Gene : Phvul.003G232400 P. vulgaris v2.1
Defline:  (1 of 3) PTHR11751:SF431 - 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 4-RELATED Genomic Order:  2359
Name:  ? Phvul.003G232400 Secondary Identifier:  ? PAC:37147732
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris ETHYL-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-7270 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G232400 0.5kb upstream 0.5kb upstream 2572 true Chr03: 46572933-46575504 Phaseolus vulgaris
Phvul.003G232400 0.5kb upstream 0.5kb upstream 500 false Chr03: 46575005-46575504 Phaseolus vulgaris
Phvul.003G232400 0.5kb downstream 0.5kb downstream 2572 true Chr03: 46572433-46575004 Phaseolus vulgaris
Phvul.003G232400 0.5kb downstream 0.5kb downstream 500 false Chr03: 46572433-46572932 Phaseolus vulgaris
Phvul.003G232400 1.0kb upstream 1.0kb upstream 3072 true Chr03: 46572933-46576004 Phaseolus vulgaris
Phvul.003G232400 1.0kb upstream 1.0kb upstream 1000 false Chr03: 46575005-46576004 Phaseolus vulgaris
Phvul.003G232400 1.0kb downstream 1.0kb downstream 3072 true Chr03: 46571933-46575004 Phaseolus vulgaris
Phvul.003G232400 1.0kb downstream 1.0kb downstream 1000 false Chr03: 46571933-46572932 Phaseolus vulgaris
Phvul.003G232400 2.0kb upstream 2.0kb upstream 4072 true Chr03: 46572933-46577004 Phaseolus vulgaris
Phvul.003G232400 2.0kb upstream 2.0kb upstream 2000 false Chr03: 46575005-46577004 Phaseolus vulgaris
Phvul.003G232400 2.0kb downstream 2.0kb downstream 4072 true Chr03: 46570933-46575004 Phaseolus vulgaris
Phvul.003G232400 2.0kb downstream 2.0kb downstream 2000 false Chr03: 46570933-46572932 Phaseolus vulgaris
Phvul.003G232400 5.0kb upstream 5.0kb upstream 7072 true Chr03: 46572933-46580004 Phaseolus vulgaris
Phvul.003G232400 5.0kb upstream 5.0kb upstream 5000 false Chr03: 46575005-46580004 Phaseolus vulgaris
Phvul.003G232400 5.0kb downstream 5.0kb downstream 7072 true Chr03: 46567933-46575004 Phaseolus vulgaris
Phvul.003G232400 5.0kb downstream 5.0kb downstream 5000 false Chr03: 46567933-46572932 Phaseolus vulgaris
Phvul.003G232400 10.0kb upstream 10.0kb upstream 12072 true Chr03: 46572933-46585004 Phaseolus vulgaris
Phvul.003G232400 10.0kb upstream 10.0kb upstream 10000 false Chr03: 46575005-46585004 Phaseolus vulgaris
Phvul.003G232400 10.0kb downstream 10.0kb downstream 12072 true Chr03: 46562933-46575004 Phaseolus vulgaris
Phvul.003G232400 10.0kb downstream 10.0kb downstream 10000 false Chr03: 46562933-46572932 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313200 5265 Fabidae View MSA
124066319 5270 Rosid View MSA
123745403 5271 Pentapetalae View MSA
122791160 5272 Eudicot View MSA
122042730 5273 Angiosperm View MSA
121351183 5274 Embryophyte View MSA
123428176 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.48855 0.0 1.77422    
cufflinks 0.137998 0.0 0.557011 Low  
cufflinks 0.0870768 0.0 0.365609 Low  
cufflinks 0.0582018 0.0 0.25239 Low Low
cufflinks 0.161575 0.0 0.643822 Low  
cufflinks 0.0424481 0.0 0.190506 Low Low
cufflinks 0.85111 0.0 2.91982    
cufflinks 2.20039 0.0 6.80417   High
cufflinks 1.59283 0.0 5.09542   High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.595783 0.0 2.13028    

0 Strain