Gene : Phvul.003G176601 P. vulgaris v2.1
Defline:  (1 of 2) 2.1.1.228 - tRNA (guanine(37)-N(1))-methyltransferase / tRNA-(N(1)G37) methyltransferase Genomic Order:  1791
Name:  ? Phvul.003G176601 Secondary Identifier:  ? PAC:37147461
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-6829 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7283 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7286 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G176601 0.5kb upstream 0.5kb upstream 2582 true Chr03: 39976173-39978754 Phaseolus vulgaris
Phvul.003G176601 0.5kb upstream 0.5kb upstream 500 false Chr03: 39978255-39978754 Phaseolus vulgaris
Phvul.003G176601 0.5kb downstream 0.5kb downstream 2582 true Chr03: 39975673-39978254 Phaseolus vulgaris
Phvul.003G176601 0.5kb downstream 0.5kb downstream 500 false Chr03: 39975673-39976172 Phaseolus vulgaris
Phvul.003G176601 1.0kb upstream 1.0kb upstream 3082 true Chr03: 39976173-39979254 Phaseolus vulgaris
Phvul.003G176601 1.0kb upstream 1.0kb upstream 1000 false Chr03: 39978255-39979254 Phaseolus vulgaris
Phvul.003G176601 1.0kb downstream 1.0kb downstream 3082 true Chr03: 39975173-39978254 Phaseolus vulgaris
Phvul.003G176601 1.0kb downstream 1.0kb downstream 1000 false Chr03: 39975173-39976172 Phaseolus vulgaris
Phvul.003G176601 2.0kb upstream 2.0kb upstream 4082 true Chr03: 39976173-39980254 Phaseolus vulgaris
Phvul.003G176601 2.0kb upstream 2.0kb upstream 2000 false Chr03: 39978255-39980254 Phaseolus vulgaris
Phvul.003G176601 2.0kb downstream 2.0kb downstream 4082 true Chr03: 39974173-39978254 Phaseolus vulgaris
Phvul.003G176601 2.0kb downstream 2.0kb downstream 2000 false Chr03: 39974173-39976172 Phaseolus vulgaris
Phvul.003G176601 5.0kb upstream 5.0kb upstream 7082 true Chr03: 39976173-39983254 Phaseolus vulgaris
Phvul.003G176601 5.0kb upstream 5.0kb upstream 5000 false Chr03: 39978255-39983254 Phaseolus vulgaris
Phvul.003G176601 5.0kb downstream 5.0kb downstream 7082 true Chr03: 39971173-39978254 Phaseolus vulgaris
Phvul.003G176601 5.0kb downstream 5.0kb downstream 5000 false Chr03: 39971173-39976172 Phaseolus vulgaris
Phvul.003G176601 10.0kb upstream 10.0kb upstream 12082 true Chr03: 39976173-39988254 Phaseolus vulgaris
Phvul.003G176601 10.0kb upstream 10.0kb upstream 10000 false Chr03: 39978255-39988254 Phaseolus vulgaris
Phvul.003G176601 10.0kb downstream 10.0kb downstream 12082 true Chr03: 39966173-39978254 Phaseolus vulgaris
Phvul.003G176601 10.0kb downstream 10.0kb downstream 10000 false Chr03: 39966173-39976172 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122251332 5265 Fabidae Singleton cluster - no MSA
124073928 5270 Rosid View MSA
123747956 5271 Pentapetalae View MSA
122788813 5272 Eudicot View MSA
122045692 5273 Angiosperm View MSA
121347346 5274 Embryophyte View MSA
123426085 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.65322 0.0 9.00559   Low
cufflinks 5.46166 0.0 17.0739    
cufflinks 4.98943 0.0 15.7121    
cufflinks 2.52254 0.0 8.68039   Low
cufflinks 3.76874 0.0 12.4227    
cufflinks 4.55431 0.0 14.5179    
cufflinks 4.92814 0.0 15.5599    
cufflinks 6.72088 0.0 20.3946   High
cufflinks 3.65231 0.0 11.9274    
cufflinks 5.55 0.0 17.3525    
cufflinks 3.42927 0.0 11.3761    

0 Strain