Gene : Phvul.003G234700 P. vulgaris v2.1
Defline:  (1 of 12) PF01535//PF13812 - PPR repeat (PPR) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  2382
Name:  ? Phvul.003G234700 Secondary Identifier:  ? PAC:37144694
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G234700 0.5kb upstream 0.5kb upstream 6135 true Chr03: 46815070-46821204 Phaseolus vulgaris
Phvul.003G234700 0.5kb upstream 0.5kb upstream 500 false Chr03: 46820705-46821204 Phaseolus vulgaris
Phvul.003G234700 0.5kb downstream 0.5kb downstream 6135 true Chr03: 46814570-46820704 Phaseolus vulgaris
Phvul.003G234700 0.5kb downstream 0.5kb downstream 500 false Chr03: 46814570-46815069 Phaseolus vulgaris
Phvul.003G234700 1.0kb upstream 1.0kb upstream 6635 true Chr03: 46815070-46821704 Phaseolus vulgaris
Phvul.003G234700 1.0kb upstream 1.0kb upstream 1000 false Chr03: 46820705-46821704 Phaseolus vulgaris
Phvul.003G234700 1.0kb downstream 1.0kb downstream 6635 true Chr03: 46814070-46820704 Phaseolus vulgaris
Phvul.003G234700 1.0kb downstream 1.0kb downstream 1000 false Chr03: 46814070-46815069 Phaseolus vulgaris
Phvul.003G234700 2.0kb upstream 2.0kb upstream 7635 true Chr03: 46815070-46822704 Phaseolus vulgaris
Phvul.003G234700 2.0kb upstream 2.0kb upstream 2000 false Chr03: 46820705-46822704 Phaseolus vulgaris
Phvul.003G234700 2.0kb downstream 2.0kb downstream 7635 true Chr03: 46813070-46820704 Phaseolus vulgaris
Phvul.003G234700 2.0kb downstream 2.0kb downstream 2000 false Chr03: 46813070-46815069 Phaseolus vulgaris
Phvul.003G234700 5.0kb upstream 5.0kb upstream 10635 true Chr03: 46815070-46825704 Phaseolus vulgaris
Phvul.003G234700 5.0kb upstream 5.0kb upstream 5000 false Chr03: 46820705-46825704 Phaseolus vulgaris
Phvul.003G234700 5.0kb downstream 5.0kb downstream 10635 true Chr03: 46810070-46820704 Phaseolus vulgaris
Phvul.003G234700 5.0kb downstream 5.0kb downstream 5000 false Chr03: 46810070-46815069 Phaseolus vulgaris
Phvul.003G234700 10.0kb upstream 10.0kb upstream 15635 true Chr03: 46815070-46830704 Phaseolus vulgaris
Phvul.003G234700 10.0kb upstream 10.0kb upstream 10000 false Chr03: 46820705-46830704 Phaseolus vulgaris
Phvul.003G234700 10.0kb downstream 10.0kb downstream 15635 true Chr03: 46805070-46820704 Phaseolus vulgaris
Phvul.003G234700 10.0kb downstream 10.0kb downstream 10000 false Chr03: 46805070-46815069 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299555 5265 Fabidae View MSA
124050394 5270 Rosid View MSA
123748612 5271 Pentapetalae View MSA
122791093 5272 Eudicot View MSA
122046985 5273 Angiosperm View MSA
121347235 5274 Embryophyte View MSA
123380515 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.04286 0.0 20.424    
cufflinks 4.58457 0.0 16.3445    
cufflinks 22.6754 0.0 74.0739   High
cufflinks 2.70457 0.0 9.32662   Low
cufflinks 5.43493 0.0 16.4164    
cufflinks 10.1142 0.0 32.3209    
cufflinks 4.70627 0.0 16.6612    
cufflinks 3.24824 0.0 12.3687    
cufflinks 3.25536 0.0 12.4825    
cufflinks 10.2741 0.0 32.8753    
cufflinks 3.90987 0.0 14.4635    

0 Strain